miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 161912 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161778 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161979 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 123753 0.67 0.803979
Target:  5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3'
miRNA:   3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5'
28737 3' -58 NC_006146.1 + 36216 0.67 0.795258
Target:  5'- uCCCC-GGGAGcGCaaGCcgGCCGgGGAGg -3'
miRNA:   3'- -GGGGuCCCUCaUGaaCG--CGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 138811 0.67 0.795258
Target:  5'- gCCCGGGGuuGGUgaGCUauuggGCGCC-CGGAc -3'
miRNA:   3'- gGGGUCCC--UCA--UGAa----CGCGGuGCCUc -5'
28737 3' -58 NC_006146.1 + 39872 0.68 0.786397
Target:  5'- gCCCgGGGGAGgagGCUgagGCugagcgGCCuGCGGGGc -3'
miRNA:   3'- -GGGgUCCCUCa--UGAa--CG------CGG-UGCCUC- -5'
28737 3' -58 NC_006146.1 + 45060 0.68 0.786397
Target:  5'- uCCCUAGGGGcgGCUgagGUGCCucgUGGGGa -3'
miRNA:   3'- -GGGGUCCCUcaUGAa--CGCGGu--GCCUC- -5'
28737 3' -58 NC_006146.1 + 130509 0.68 0.786397
Target:  5'- cCCCCGcGGGAGgcUACUacGCGCCggGCGGcGa -3'
miRNA:   3'- -GGGGU-CCCUC--AUGAa-CGCGG--UGCCuC- -5'
28737 3' -58 NC_006146.1 + 10396 0.68 0.777406
Target:  5'- gCUCAGGGuGGUGCUgUGCuaCACGGuGg -3'
miRNA:   3'- gGGGUCCC-UCAUGA-ACGcgGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 56317 0.68 0.759061
Target:  5'- gCCCAGGccGUAgcUGCGCCGCGaGAa -3'
miRNA:   3'- gGGGUCCcuCAUgaACGCGGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 4952 0.68 0.759061
Target:  5'- gCCCCGGGGAccag--GgGCCACGaGAGc -3'
miRNA:   3'- -GGGGUCCCUcaugaaCgCGGUGC-CUC- -5'
28737 3' -58 NC_006146.1 + 161745 0.68 0.755339
Target:  5'- gCCCGGGGGuGgcgGCUgagguccgaggggGCGCCuggGCGGGGg -3'
miRNA:   3'- gGGGUCCCU-Ca--UGAa------------CGCGG---UGCCUC- -5'
28737 3' -58 NC_006146.1 + 104657 0.68 0.749725
Target:  5'- cCCCCAccGuGGAGaaUGCcUGCGCCGCGauaGAGg -3'
miRNA:   3'- -GGGGU--C-CCUC--AUGaACGCGGUGC---CUC- -5'
28737 3' -58 NC_006146.1 + 100026 0.69 0.731723
Target:  5'- cCCCCGGGGAGcagcccugacaaaccACcUGCGCCG-GGAa -3'
miRNA:   3'- -GGGGUCCCUCa--------------UGaACGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 35208 0.69 0.730767
Target:  5'- gUCCCAGGGAGggaagaGgGCuCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUCaugaa-CgCG-GugCCUC- -5'
28737 3' -58 NC_006146.1 + 75782 0.69 0.721163
Target:  5'- gCCCAGGGGGcucUACUcggGCGUCuCGGGc -3'
miRNA:   3'- gGGGUCCCUC---AUGAa--CGCGGuGCCUc -5'
28737 3' -58 NC_006146.1 + 22127 0.69 0.721163
Target:  5'- -aCCGGGGAucGUGCUguUGCGCCcCGGc- -3'
miRNA:   3'- ggGGUCCCU--CAUGA--ACGCGGuGCCuc -5'
28737 3' -58 NC_006146.1 + 153199 0.69 0.711486
Target:  5'- cCCCCAGGc---GCUUGgcCGCCACGGGc -3'
miRNA:   3'- -GGGGUCCcucaUGAAC--GCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 48971 0.69 0.711486
Target:  5'- uUCCCGGGGA-UGa--GCGUCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUcAUgaaCGCGGugCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.