miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28739 5' -49.6 NC_006146.1 + 77300 0.7 0.957264
Target:  5'- aGCAGCCCcagGAGCccgGCGGGUCGc--- -3'
miRNA:   3'- aCGUUGGGa--UUCGa--CGUCUAGUaucc -5'
28739 5' -49.6 NC_006146.1 + 114977 0.68 0.985319
Target:  5'- aGCAGCCCacGGCcGCGGAcaUCA-AGGc -3'
miRNA:   3'- aCGUUGGGauUCGaCGUCU--AGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 12790 0.69 0.979086
Target:  5'- cGCGGCCCUGcAGggGCGGA-CGUAcGGa -3'
miRNA:   3'- aCGUUGGGAU-UCgaCGUCUaGUAU-CC- -5'
28739 5' -49.6 NC_006146.1 + 88571 0.69 0.981349
Target:  5'- cGUAACCCggauaugGAGCUGguGGgggC-UGGGg -3'
miRNA:   3'- aCGUUGGGa------UUCGACguCUa--GuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 100693 0.69 0.973958
Target:  5'- cGCGGCCCUcggcacccGGcGCUGCGGGg-GUGGGu -3'
miRNA:   3'- aCGUUGGGA--------UU-CGACGUCUagUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 32169 0.69 0.973958
Target:  5'- gGCAACCgUAAGgaGgGGGggGUAGGg -3'
miRNA:   3'- aCGUUGGgAUUCgaCgUCUagUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 72506 0.7 0.967651
Target:  5'- cUGCAGCgCCUGcggaggagcggacGGCUGCGGcUCucgGGGa -3'
miRNA:   3'- -ACGUUG-GGAU-------------UCGACGUCuAGua-UCC- -5'
28739 5' -49.6 NC_006146.1 + 135615 0.7 0.961074
Target:  5'- gGCAACCCcgGGGCUGauCAGGUUAauaAGGa -3'
miRNA:   3'- aCGUUGGGa-UUCGAC--GUCUAGUa--UCC- -5'
28739 5' -49.6 NC_006146.1 + 8571 0.7 0.957264
Target:  5'- cUGCAGCCC-GGGCUGCAGcacc-AGGc -3'
miRNA:   3'- -ACGUUGGGaUUCGACGUCuaguaUCC- -5'
28739 5' -49.6 NC_006146.1 + 14350 0.68 0.987045
Target:  5'- uUGCGGCCCUGcuGGUgggGuCGGGUCccGGGa -3'
miRNA:   3'- -ACGUUGGGAU--UCGa--C-GUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 161740 0.68 0.987045
Target:  5'- uUGUAGCCCggggguggcGGCUG-AGGUCcgAGGg -3'
miRNA:   3'- -ACGUUGGGau-------UCGACgUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 108683 0.68 0.988609
Target:  5'- cUGC-GCCCagAGGCUGCGGcgCA-GGGc -3'
miRNA:   3'- -ACGuUGGGa-UUCGACGUCuaGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 98709 0.66 0.998256
Target:  5'- aGCAGCCagUAGGCUGCgAGAgaAUGGc -3'
miRNA:   3'- aCGUUGGg-AUUCGACG-UCUagUAUCc -5'
28739 5' -49.6 NC_006146.1 + 66685 0.66 0.998256
Target:  5'- gGCAccucccugaACCCUcGGCuUGCGGcccCGUGGGg -3'
miRNA:   3'- aCGU---------UGGGAuUCG-ACGUCua-GUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 77638 0.66 0.997907
Target:  5'- gGCAACCCcgcGAGCgGCuacAUCGUGGa -3'
miRNA:   3'- aCGUUGGGa--UUCGaCGuc-UAGUAUCc -5'
28739 5' -49.6 NC_006146.1 + 16192 0.66 0.997907
Target:  5'- gGCcGCCCUGgugGGCUGCA--UC-UGGGc -3'
miRNA:   3'- aCGuUGGGAU---UCGACGUcuAGuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 49481 0.66 0.9975
Target:  5'- cGgGGCCCUGA--UGUuGGUCAUGGGc -3'
miRNA:   3'- aCgUUGGGAUUcgACGuCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 102905 0.66 0.99703
Target:  5'- aGgGGCCgUGuggcguGGCUGCgccccaAGAUCGUGGGc -3'
miRNA:   3'- aCgUUGGgAU------UCGACG------UCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 52810 0.67 0.994361
Target:  5'- aGCuccuGACCUUccugggugaagAGGCUGacaacCAGAUCAUGGGg -3'
miRNA:   3'- aCG----UUGGGA-----------UUCGAC-----GUCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 138104 0.67 0.993455
Target:  5'- aGCAGCCaaggagguGCUGCGGGg-AUAGGc -3'
miRNA:   3'- aCGUUGGgauu----CGACGUCUagUAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.