Results 41 - 60 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 88912 | 0.69 | 0.739459 |
Target: 5'- uAGGGCACUgggGCUCuuguGGCugAGGCUgagGCu -3' miRNA: 3'- -UCCCGUGGa--UGAGcu--CCG--UCCGAa--UG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 86577 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 86543 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 86509 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 85306 | 0.69 | 0.739459 |
Target: 5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3' miRNA: 3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 84945 | 0.72 | 0.567429 |
Target: 5'- cGGaGGCGCCUcGCUUGGGGgGGGCa--- -3' miRNA: 3'- -UC-CCGUGGA-UGAGCUCCgUCCGaaug -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 78950 | 0.66 | 0.862727 |
Target: 5'- -aGGCuCCUAaaaGGGGCAGGCcUGCc -3' miRNA: 3'- ucCCGuGGAUgagCUCCGUCCGaAUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 77894 | 0.66 | 0.855038 |
Target: 5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3' miRNA: 3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 75808 | 0.68 | 0.795957 |
Target: 5'- cGGGCGCCgccUUCGAGGCccugcGGGaCaUGCa -3' miRNA: 3'- uCCCGUGGau-GAGCUCCG-----UCC-GaAUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 72564 | 0.69 | 0.729661 |
Target: 5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3' miRNA: 3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 68157 | 0.71 | 0.618301 |
Target: 5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3' miRNA: 3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 61227 | 0.66 | 0.862727 |
Target: 5'- cGGGUACCggACUgCGAGGU-GGUcUGCu -3' miRNA: 3'- uCCCGUGGa-UGA-GCUCCGuCCGaAUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 60599 | 0.68 | 0.784102 |
Target: 5'- cAGGGCggcgaugaacGCCUACgcCGAGGCcaucauggcagacgGGGCUcUGCa -3' miRNA: 3'- -UCCCG----------UGGAUGa-GCUCCG--------------UCCGA-AUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 58107 | 0.66 | 0.847147 |
Target: 5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3' miRNA: 3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 57274 | 0.66 | 0.877476 |
Target: 5'- gGGGGCGagacaacauCCaGCgcCGGGGCAGGCg--- -3' miRNA: 3'- -UCCCGU---------GGaUGa-GCUCCGUCCGaaug -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 51816 | 0.68 | 0.795957 |
Target: 5'- gAGGGCgGCCUcCUCgggaagcgccgGAGGUGGGC-UGCg -3' miRNA: 3'- -UCCCG-UGGAuGAG-----------CUCCGUCCGaAUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 51738 | 0.66 | 0.884525 |
Target: 5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3' miRNA: 3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 50178 | 0.67 | 0.830785 |
Target: 5'- gGGGGCGuuUgcACUUGcGGCGGGCUc-- -3' miRNA: 3'- -UCCCGUggA--UGAGCuCCGUCCGAaug -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 48625 | 0.68 | 0.768254 |
Target: 5'- cGGGUGCCg--UgGGGGCGGGCUccggGCg -3' miRNA: 3'- uCCCGUGGaugAgCUCCGUCCGAa---UG- -5' |
|||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 47078 | 0.7 | 0.659226 |
Target: 5'- gGGGGCGCCUgACgaaGAcGGUGGGC-UGCg -3' miRNA: 3'- -UCCCGUGGA-UGag-CU-CCGUCCGaAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home