miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 137702 0.76 0.152381
Target:  5'- cCCCCUCCGgcCUCCCCccggGGuGCCcGGGCCu -3'
miRNA:   3'- -GGGGAGGU--GAGGGG----CC-CGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 137574 0.66 0.568682
Target:  5'- gCCCCggagcacCCGgaCCCCGGaGCCccAGGaCCGa -3'
miRNA:   3'- -GGGGa------GGUgaGGGGCC-CGGa-UCC-GGC- -5'
28746 5' -64.9 NC_006146.1 + 137571 0.67 0.495397
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcuCGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGA-GGG------------GCCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137524 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137478 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137431 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137385 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137338 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137292 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137245 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137199 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137152 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137106 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137059 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 137013 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136966 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136920 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136873 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136842 0.71 0.307935
Target:  5'- gCCCCgugCCACgggaCCCCcGGCCggcaUAGGCCc -3'
miRNA:   3'- -GGGGa--GGUGa---GGGGcCCGG----AUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 136827 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.