miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 137769 0.66 0.969178
Target:  5'- cACCCggagCggggcaGCGGCCCggcgaacccgccgGCGGCCa -3'
miRNA:   3'- cUGGGa---Ga-----UGUCGGGaaaaa--------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 64241 0.66 0.96826
Target:  5'- uGCCCggggagaggACGGCCCUgaccaGCcGGCCg -3'
miRNA:   3'- cUGGGaga------UGUCGGGAaaaa-CG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 4341 0.66 0.96826
Target:  5'- cGCUCUUUgaGCAGCUCUUcagcgacGUGGCCa -3'
miRNA:   3'- cUGGGAGA--UGUCGGGAAaaa----CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 58909 0.66 0.96826
Target:  5'- -uCCCUCUcUGGaCCCUggugUUUGUgGGCCu -3'
miRNA:   3'- cuGGGAGAuGUC-GGGAa---AAACG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 71902 0.66 0.96826
Target:  5'- gGACCCUCcugcgcGCGGCCuCUgaccUG-GGCCu -3'
miRNA:   3'- -CUGGGAGa-----UGUCGG-GAaaa-ACgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 104457 0.66 0.96826
Target:  5'- cGCCCUCgGCAGgCagc--UGCGGCUc -3'
miRNA:   3'- cUGGGAGaUGUCgGgaaaaACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 106010 0.66 0.96826
Target:  5'- cGACCCcuuUCUuCAGUCCa---UGCuGGCCg -3'
miRNA:   3'- -CUGGG---AGAuGUCGGGaaaaACG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 140710 0.66 0.96826
Target:  5'- cGGCCCUCUGCuGUCCU---UGCuuaauuuuaGCCc -3'
miRNA:   3'- -CUGGGAGAUGuCGGGAaaaACGc--------CGG- -5'
28757 5' -53.8 NC_006146.1 + 160085 0.66 0.96506
Target:  5'- aGCCUaUCUcAUGGCCCaugg-GCGGCCu -3'
miRNA:   3'- cUGGG-AGA-UGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 128228 0.66 0.96506
Target:  5'- --gCCUCagGCAGCCCaccgcggGCGaGCCg -3'
miRNA:   3'- cugGGAGa-UGUCGGGaaaaa--CGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 123128 0.66 0.96506
Target:  5'- gGGCUUUCagACGGCCCUg---GaGGCCg -3'
miRNA:   3'- -CUGGGAGa-UGUCGGGAaaaaCgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 102311 0.66 0.96506
Target:  5'- cGCCCacCUGCAcGCCCgggg-GCaGGCCc -3'
miRNA:   3'- cUGGGa-GAUGU-CGGGaaaaaCG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 18974 0.66 0.96506
Target:  5'- aGACagggUUAgAGCCCUccg-GCGGCCg -3'
miRNA:   3'- -CUGgga-GAUgUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 122636 0.66 0.963035
Target:  5'- gGGCCCUCUuucgcGCcaggacggcggcgggGGCCCUccgcGCGGCg -3'
miRNA:   3'- -CUGGGAGA-----UG---------------UCGGGAaaaaCGCCGg -5'
28757 5' -53.8 NC_006146.1 + 50067 0.66 0.96164
Target:  5'- aGGCCCUCcaggaAGCgCUUg-UGCGGCa -3'
miRNA:   3'- -CUGGGAGaug--UCGgGAAaaACGCCGg -5'
28757 5' -53.8 NC_006146.1 + 127141 0.66 0.96093
Target:  5'- -cCCCUCUGCGGCCCacuccucucUGUccGCCg -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaa-----ACGc-CGG- -5'
28757 5' -53.8 NC_006146.1 + 61258 0.66 0.957995
Target:  5'- aGACCCUCUucagcgaucggGCuggucucacgggGGCCUgucgcgugUUUGCGGCg -3'
miRNA:   3'- -CUGGGAGA-----------UG------------UCGGGaa------AAACGCCGg -5'
28757 5' -53.8 NC_006146.1 + 5435 0.66 0.957995
Target:  5'- uGGCCUUCUGCcuGGCCUUccuacUGGCCa -3'
miRNA:   3'- -CUGGGAGAUG--UCGGGAaaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 63314 0.66 0.957995
Target:  5'- cACCCUCUGCAuucugaccGCCgUg---GCGGUg -3'
miRNA:   3'- cUGGGAGAUGU--------CGGgAaaaaCGCCGg -5'
28757 5' -53.8 NC_006146.1 + 51924 0.66 0.957995
Target:  5'- aGGCaCCgacggGCGGCCCcgg-UGCGGUCu -3'
miRNA:   3'- -CUG-GGaga--UGUCGGGaaaaACGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.