miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 138779 0.66 0.994271
Target:  5'- cACCCCGGGGUgacguggcaccccUGcgugcuuuUCAGGUg- -3'
miRNA:   3'- uUGGGGCCCCG-------------ACu-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 137215 0.66 0.991188
Target:  5'- cACCCCGGGGagGAagcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 137028 0.68 0.96665
Target:  5'- cACCCCGGGGagGAggcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 135966 0.72 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 135617 1.04 0.01709
Target:  5'- cAACCCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGGGGCCCCGACUAGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 127954 0.73 0.799176
Target:  5'- cGugCCCGGGGCgGAgggCAGGg-- -3'
miRNA:   3'- -UugGGGCCCCGaCUa--GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 126641 0.72 0.853719
Target:  5'- cACCCCGGGGCccg-CAGGg-- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 126555 0.69 0.95934
Target:  5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 124627 0.68 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 119090 0.66 0.991188
Target:  5'- cGCCCCGGGGaa---CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 116799 0.67 0.986754
Target:  5'- aGGCCaCGGGGggGAgCAGGUUAg -3'
miRNA:   3'- -UUGGgGCCCCgaCUaGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 115795 0.69 0.963121
Target:  5'- aGGCCCUGGaGCUGAaCAGGa-- -3'
miRNA:   3'- -UUGGGGCCcCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 113810 0.67 0.984947
Target:  5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGGgGCCCCGACua------GUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 106647 0.69 0.963121
Target:  5'- uGCUgCGGccGGCUGGUCAGGg-- -3'
miRNA:   3'- uUGGgGCC--CCGACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 102647 0.67 0.982957
Target:  5'- --aCCCGGGGCUGG-CAGu--- -3'
miRNA:   3'- uugGGGCCCCGACUaGUCcaau -5'
28761 5' -49.6 NC_006146.1 + 99555 0.78 0.58545
Target:  5'- -cCCCCGGGGCagaGAUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa--CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 97968 0.67 0.982957
Target:  5'- uGACCUCGGGGaaGAUgGGGc-- -3'
miRNA:   3'- -UUGGGGCCCCgaCUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 96158 0.66 0.989864
Target:  5'- -cCCCCGGaGGCUGGcUCAcugGGUc- -3'
miRNA:   3'- uuGGGGCC-CCGACU-AGU---CCAau -5'
28761 5' -49.6 NC_006146.1 + 95517 0.66 0.994359
Target:  5'- --aUCCGGGaGCUG-UCGGGUg- -3'
miRNA:   3'- uugGGGCCC-CGACuAGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 90625 0.68 0.975797
Target:  5'- cGCCCCGGGGa-GGUaGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUAgUCCAau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.