Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 150664 | 0.68 | 0.952232 |
|
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 153741 | 0.68 | 0.952232 |
|
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 156819 | 0.68 | 0.952232 |
|
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 39528 | 0.68 | 0.956314 |
|
Target: 5'- --uGAUGGgcugGGGGAGGcGGCgcaagGGCUg- -3' miRNA: 3'- guuCUACUa---CCCCUCC-CCGa----UUGAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 141970 | 0.67 | 0.963751 |
|
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 145048 | 0.67 | 0.963751 |
|
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
|||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 41303 | 0.66 | 0.984729 |
|
Target: 5'- --cGGUGA-GGGGcAGGGGCUuuuucagagggAGCUg- -3' miRNA: 3'- guuCUACUaCCCC-UCCCCGA-----------UUGAaa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home