miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 170617 0.7 0.572315
Target:  5'- gGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- aCCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 170439 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 170365 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 169684 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 169508 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 169434 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 168752 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 168576 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 168502 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 167820 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 167570 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 163065 0.7 0.562356
Target:  5'- aGGUCCGa--CAGGUGUcuaCCGGGCGCc -3'
miRNA:   3'- aCCGGGCgagGUCUACAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 157224 0.7 0.572315
Target:  5'- aGGCCCGC-CCuGAUGUUCUcaaucucauAGGUg- -3'
miRNA:   3'- aCCGGGCGaGGuCUACAAGG---------UCCGug -5'
28764 5' -58.7 NC_006146.1 + 156358 0.74 0.340158
Target:  5'- cGGCCCagcaGCUCCAGGgcccggUCCAGGCu- -3'
miRNA:   3'- aCCGGG----CGAGGUCUaca---AGGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 154958 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 151880 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 150025 0.71 0.532784
Target:  5'- uUGGCCCGCUCCAGcaucGUGcgCCccuGCAg -3'
miRNA:   3'- -ACCGGGCGAGGUC----UACaaGGuc-CGUg -5'
28764 5' -58.7 NC_006146.1 + 148802 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 145724 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 142647 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.