miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28766 5' -57.8 NC_006146.1 + 127506 0.66 0.872196
Target:  5'- gGUCgcaGCCGGggCAGAGGCaGCCGcuGCu -3'
miRNA:   3'- -CAGac-UGGCCa-GUUUCCGaCGGCc-CG- -5'
28766 5' -57.8 NC_006146.1 + 33213 0.66 0.872196
Target:  5'- ---aGGCCGG--AGGGGgaGCCGGGa -3'
miRNA:   3'- cagaCUGGCCagUUUCCgaCGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 52138 0.66 0.872196
Target:  5'- cUCgGGCCccaccaGGUCGAAGccGCUGCCGuuGGCc -3'
miRNA:   3'- cAGaCUGG------CCAGUUUC--CGACGGC--CCG- -5'
28766 5' -57.8 NC_006146.1 + 98987 0.66 0.864904
Target:  5'- gGUCaGGCCcaGGUCAGAGGCcgcgcGCaggaGGGUc -3'
miRNA:   3'- -CAGaCUGG--CCAGUUUCCGa----CGg---CCCG- -5'
28766 5' -57.8 NC_006146.1 + 47975 0.66 0.864904
Target:  5'- cUUUGGCCagagcguggGGUCAGAGGUgGCUGGugGCg -3'
miRNA:   3'- cAGACUGG---------CCAGUUUCCGaCGGCC--CG- -5'
28766 5' -57.8 NC_006146.1 + 169361 0.66 0.864164
Target:  5'- -cCUGGCgGGggaGAgggggcaGGGCUggcGCCGGGCc -3'
miRNA:   3'- caGACUGgCCag-UU-------UCCGA---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 170292 0.66 0.864164
Target:  5'- -cCUGGCgGGggaGAgggggcaGGGCUggcGCCGGGCc -3'
miRNA:   3'- caGACUGgCCag-UU-------UCCGA---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 168429 0.66 0.864164
Target:  5'- -cCUGGCgGGggaGAgggggcaGGGCUggcGCCGGGCc -3'
miRNA:   3'- caGACUGgCCag-UU-------UCCGA---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 167497 0.66 0.864164
Target:  5'- -cCUGGCgGGggaGAgggggcaGGGCUggcGCCGGGCc -3'
miRNA:   3'- caGACUGgCCag-UU-------UCCGA---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 40006 0.66 0.85741
Target:  5'- --gUGGCCGGUgugggcguagCAGGGGgcCUGCUGGGg -3'
miRNA:   3'- cagACUGGCCA----------GUUUCC--GACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 45228 0.66 0.85741
Target:  5'- cUCUGgaACCGGaCGGAGGCUG--GGGUg -3'
miRNA:   3'- cAGAC--UGGCCaGUUUCCGACggCCCG- -5'
28766 5' -57.8 NC_006146.1 + 106190 0.66 0.85741
Target:  5'- -gCUGACacgGGUCccGGGCcuccUGCCaGGGCc -3'
miRNA:   3'- caGACUGg--CCAGuuUCCG----ACGG-CCCG- -5'
28766 5' -57.8 NC_006146.1 + 16189 0.66 0.849719
Target:  5'- -gCUGGCCGccCugguGGGCUGCaucuGGGCg -3'
miRNA:   3'- caGACUGGCcaGuu--UCCGACGg---CCCG- -5'
28766 5' -57.8 NC_006146.1 + 53778 0.66 0.849719
Target:  5'- gGUCUcGCCGGaCGAGGGCcucgGCCcgcgcGGCg -3'
miRNA:   3'- -CAGAcUGGCCaGUUUCCGa---CGGc----CCG- -5'
28766 5' -57.8 NC_006146.1 + 127580 0.66 0.841837
Target:  5'- -cCUGGgCGGcCGAGGccGCgccgGCCGGGUg -3'
miRNA:   3'- caGACUgGCCaGUUUC--CGa---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 115990 0.66 0.841837
Target:  5'- -aCUG-CCGGUCccuGAAGGCcgGCCagacGGCg -3'
miRNA:   3'- caGACuGGCCAG---UUUCCGa-CGGc---CCG- -5'
28766 5' -57.8 NC_006146.1 + 84525 0.66 0.841837
Target:  5'- cGUCguGCCGGUac-AGGC-GCCGuGGCa -3'
miRNA:   3'- -CAGacUGGCCAguuUCCGaCGGC-CCG- -5'
28766 5' -57.8 NC_006146.1 + 166099 0.66 0.841837
Target:  5'- ---gGAUCGGUU-GAGGCgccCCGGGCg -3'
miRNA:   3'- cagaCUGGCCAGuUUCCGac-GGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 51517 0.66 0.833771
Target:  5'- gGUCUGGCgGGgguuuGGgaGuuGGGCu -3'
miRNA:   3'- -CAGACUGgCCaguuuCCgaCggCCCG- -5'
28766 5' -57.8 NC_006146.1 + 85554 0.67 0.825528
Target:  5'- aUCUGGucacaCGGUCGGGGGCacGUgGGGUg -3'
miRNA:   3'- cAGACUg----GCCAGUUUCCGa-CGgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.