miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 77934 0.66 0.631483
Target:  5'- gCAGGUGCcgGGGgUCGCUguuugGUCUGGGCCg -3'
miRNA:   3'- -GUUCGUG--CCCgGGCGGa----CGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 55376 0.66 0.631483
Target:  5'- --cGCGCGGGa-CGCCcgggGCaCCGaGGCCa -3'
miRNA:   3'- guuCGUGCCCggGCGGa---CG-GGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 167299 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 168231 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 119307 0.66 0.631483
Target:  5'- -uGGUACGcuGGCCCcUCUGgcuccCCCGGGCCc -3'
miRNA:   3'- guUCGUGC--CCGGGcGGAC-----GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 146783 0.66 0.631483
Target:  5'- aCAGGUACaGGCCCgguGCCagccGCCCucGACCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---CGGa---CGGGc-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 169163 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 117920 0.66 0.631483
Target:  5'- -cGGCcgGCaGGUCCGCCUGCgcacuaCCGG-CCu -3'
miRNA:   3'- guUCG--UGcCCGGGCGGACG------GGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 41504 0.66 0.630518
Target:  5'- --uGCGCGGggacgacGCCCGgCUgacGCCCGGGauCCg -3'
miRNA:   3'- guuCGUGCC-------CGGGCgGA---CGGGCCU--GG- -5'
28767 3' -63.6 NC_006146.1 + 33168 0.66 0.627625
Target:  5'- -cGGC-UGGGCaCCGCCgcgccgccgcucgGuCCUGGGCCu -3'
miRNA:   3'- guUCGuGCCCG-GGCGGa------------C-GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 145423 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 116994 0.66 0.621839
Target:  5'- aCGAGCGCGuGGa--GCggGCCCuGGACCu -3'
miRNA:   3'- -GUUCGUGC-CCgggCGgaCGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 84566 0.66 0.621839
Target:  5'- gAAGgAUgugaGGGCCCugaucaagacCCUGCCCaGGGCCu -3'
miRNA:   3'- gUUCgUG----CCCGGGc---------GGACGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 47245 0.66 0.621839
Target:  5'- -uGGCGCGGGUCgacgugGCCccugGCCCGGGu- -3'
miRNA:   3'- guUCGUGCCCGGg-----CGGa---CGGGCCUgg -5'
28767 3' -63.6 NC_006146.1 + 157734 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 68570 0.66 0.621839
Target:  5'- gCGAGCcgagaucgaucUGGGCCUGCC--CCCGGGCg -3'
miRNA:   3'- -GUUCGu----------GCCCGGGCGGacGGGCCUGg -5'
28767 3' -63.6 NC_006146.1 + 154657 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 151579 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 148501 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 86804 0.66 0.621839
Target:  5'- uGAGCGUGGccaugaGCCCGCCcauucucGCCCguGGGCCu -3'
miRNA:   3'- gUUCGUGCC------CGGGCGGa------CGGG--CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.