miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 5' -53.3 NC_006146.1 + 77546 0.66 0.980367
Target:  5'- cGGGCcaCGUGUAcguGGCGCUgucCAGGg -3'
miRNA:   3'- uCCCGa-GCACAUcuuUCGUGGa--GUCC- -5'
28767 5' -53.3 NC_006146.1 + 57882 0.66 0.980367
Target:  5'- cGGGC-CGacagccggGUGGAAcGGCGCCUugucCAGGa -3'
miRNA:   3'- uCCCGaGCa-------CAUCUU-UCGUGGA----GUCC- -5'
28767 5' -53.3 NC_006146.1 + 161749 0.66 0.980367
Target:  5'- gGGGGUggCGgcugagGUccgAGggGGCGCCUgggCGGGg -3'
miRNA:   3'- -UCCCGa-GCa-----CA---UCuuUCGUGGA---GUCC- -5'
28767 5' -53.3 NC_006146.1 + 119956 0.66 0.980367
Target:  5'- gAGGuCUCG-GUGGggGGUcaggagacGCCUCGGa -3'
miRNA:   3'- -UCCcGAGCaCAUCuuUCG--------UGGAGUCc -5'
28767 5' -53.3 NC_006146.1 + 12837 0.66 0.980367
Target:  5'- cGGcGGC-CGgacccgAGGAGGCGCCUgGGGc -3'
miRNA:   3'- -UC-CCGaGCaca---UCUUUCGUGGAgUCC- -5'
28767 5' -53.3 NC_006146.1 + 105797 0.66 0.978104
Target:  5'- cAGGGCUCccagacgGGAAAGaaCACC-CAGGg -3'
miRNA:   3'- -UCCCGAGcaca---UCUUUC--GUGGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 170070 0.66 0.977146
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 155565 0.66 0.975653
Target:  5'- cGGGCUCGcGcGG--GGCGCCcgcCAGGg -3'
miRNA:   3'- uCCCGAGCaCaUCuuUCGUGGa--GUCC- -5'
28767 5' -53.3 NC_006146.1 + 125907 0.66 0.973008
Target:  5'- -cGGCUCGUGgAGucuGCGCCUCcgucGGc -3'
miRNA:   3'- ucCCGAGCACaUCuuuCGUGGAGu---CC- -5'
28767 5' -53.3 NC_006146.1 + 71779 0.66 0.973008
Target:  5'- uGGGGCUgGUGgcGuuAGgGCUUguGGc -3'
miRNA:   3'- -UCCCGAgCACauCuuUCgUGGAguCC- -5'
28767 5' -53.3 NC_006146.1 + 99031 0.66 0.970161
Target:  5'- -cGGC-CGUGUAG-AGGCcCCcCAGGg -3'
miRNA:   3'- ucCCGaGCACAUCuUUCGuGGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 54780 0.66 0.967105
Target:  5'- cAGGGC-CGccagGGAgcGCGCCUUGGGc -3'
miRNA:   3'- -UCCCGaGCaca-UCUuuCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 14819 0.66 0.967105
Target:  5'- cGGGC-CG-GaGGAGGGCACgguCUCGGGc -3'
miRNA:   3'- uCCCGaGCaCaUCUUUCGUG---GAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 142472 0.67 0.963835
Target:  5'- uGGGGCUCccGUGGAgugacccgGAGCcGCCUCcuuGGu -3'
miRNA:   3'- -UCCCGAGcaCAUCU--------UUCG-UGGAGu--CC- -5'
28767 5' -53.3 NC_006146.1 + 77872 0.67 0.963496
Target:  5'- uAGGGCcgUCuugucugacccgaGUGUAGuugauGCACUUCGGGa -3'
miRNA:   3'- -UCCCG--AG-------------CACAUCuuu--CGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 112517 0.67 0.963496
Target:  5'- aGGGGC-CG-GUGGAGGGCcugggucACCUCGa- -3'
miRNA:   3'- -UCCCGaGCaCAUCUUUCG-------UGGAGUcc -5'
28767 5' -53.3 NC_006146.1 + 85570 0.67 0.960344
Target:  5'- gGGGGCaCGUGggguggcAGGAGGCagccgcccGCCUCGGa -3'
miRNA:   3'- -UCCCGaGCACa------UCUUUCG--------UGGAGUCc -5'
28767 5' -53.3 NC_006146.1 + 110227 0.67 0.959982
Target:  5'- gAGGGCacacaccacccccUCGUGggucucgauGAGGGUGCaCUCGGGg -3'
miRNA:   3'- -UCCCG-------------AGCACau-------CUUUCGUG-GAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 159907 0.67 0.956627
Target:  5'- cGGGGCccUCGaagaUGGggGGCACCaUCuGGg -3'
miRNA:   3'- -UCCCG--AGCac--AUCuuUCGUGG-AGuCC- -5'
28767 5' -53.3 NC_006146.1 + 103738 0.67 0.956627
Target:  5'- cGGGCgaagGUGUAGGAGGUcauuuCCUCcauGGGg -3'
miRNA:   3'- uCCCGag--CACAUCUUUCGu----GGAG---UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.