miRNA display CGI


Results 1 - 20 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 155464 0.66 0.628831
Target:  5'- cUGCUgCgCCAGGCaGGACugcagcCGGGCCa -3'
miRNA:   3'- cACGGgG-GGUCCG-CCUGua----GUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 76884 0.66 0.599701
Target:  5'- cGUGCCCCugCCGGGCcGcACGUgGGaGCCa -3'
miRNA:   3'- -CACGGGG--GGUCCGcC-UGUAgUC-CGGg -5'
28768 5' -63.2 NC_006146.1 + 62324 0.66 0.599701
Target:  5'- -gGCUCCCCGGGgGuGcCGUCAGcucGCCUc -3'
miRNA:   3'- caCGGGGGGUCCgC-CuGUAGUC---CGGG- -5'
28768 5' -63.2 NC_006146.1 + 106040 0.66 0.590025
Target:  5'- -gGCCgCCCAucCGGACAUUGGaGCCUg -3'
miRNA:   3'- caCGGgGGGUccGCCUGUAGUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 140152 0.66 0.590025
Target:  5'- -gGUgCCCCGGGU--ACAguuugCGGGCCCu -3'
miRNA:   3'- caCGgGGGGUCCGccUGUa----GUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 77284 0.66 0.590025
Target:  5'- -gGCCUCCgGGGaGGACAgCAGcCCCa -3'
miRNA:   3'- caCGGGGGgUCCgCCUGUaGUCcGGG- -5'
28768 5' -63.2 NC_006146.1 + 70887 0.66 0.590025
Target:  5'- cUGCUCCCCGGGggaagaUGGGCGaugUCAGcaacaaccaccGCCCa -3'
miRNA:   3'- cACGGGGGGUCC------GCCUGU---AGUC-----------CGGG- -5'
28768 5' -63.2 NC_006146.1 + 51822 0.66 0.589059
Target:  5'- -gGCCUCCUcgggaagcgccggAGGUGGGCugcgguugCAGGCCa -3'
miRNA:   3'- caCGGGGGG-------------UCCGCCUGua------GUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 41984 0.66 0.584233
Target:  5'- cUGCCUCgUccacugggGGGCGGACgAgcacgaagcccgcguUCGGGCCCg -3'
miRNA:   3'- cACGGGGgG--------UCCGCCUG-U---------------AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 64376 0.66 0.609398
Target:  5'- gGUGCCCaCCAGG-GGAUgcgcccaccuGUCugacuuGGCCCc -3'
miRNA:   3'- -CACGGGgGGUCCgCCUG----------UAGu-----CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 15979 0.66 0.609398
Target:  5'- -cGUUCCCUgcgccugcgaaGGGCGGACgcgGUCAG-CCCg -3'
miRNA:   3'- caCGGGGGG-----------UCCGCCUG---UAGUCcGGG- -5'
28768 5' -63.2 NC_006146.1 + 129309 0.66 0.609398
Target:  5'- -aGCCCCCCGGGCcucuccgccucGGcCAgccagUAGGCggCCg -3'
miRNA:   3'- caCGGGGGGUCCG-----------CCuGUa----GUCCG--GG- -5'
28768 5' -63.2 NC_006146.1 + 104425 0.66 0.628831
Target:  5'- cUGCCgcauaCCUacaAGGUGGACAggggCGGcGCCCu -3'
miRNA:   3'- cACGGg----GGG---UCCGCCUGUa---GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 64689 0.66 0.628831
Target:  5'- --cUCCCCCA---GGACAcCAGGCCCu -3'
miRNA:   3'- cacGGGGGGUccgCCUGUaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 72555 0.66 0.628831
Target:  5'- uGUGUCUCCUggaccGGGaCGGGCcgCGcccGGCCCc -3'
miRNA:   3'- -CACGGGGGG-----UCC-GCCUGuaGU---CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 123512 0.66 0.61911
Target:  5'- -gGCCacggucgaCCCCAGGCGGGUcgCGGGUg- -3'
miRNA:   3'- caCGG--------GGGGUCCGCCUGuaGUCCGgg -5'
28768 5' -63.2 NC_006146.1 + 127451 0.66 0.61911
Target:  5'- cUGCCgCUCCAgauguGGCGGcCcgCAGGCUa -3'
miRNA:   3'- cACGG-GGGGU-----CCGCCuGuaGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 124940 0.66 0.61911
Target:  5'- -aGCUgCCCCGGGCaGagaGCGUCgAGGUCCc -3'
miRNA:   3'- caCGG-GGGGUCCGcC---UGUAG-UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 18971 0.66 0.61911
Target:  5'- -gGCCCCUagagaGGGCGG-CA--GGGCCg -3'
miRNA:   3'- caCGGGGGg----UCCGCCuGUagUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 114147 0.66 0.617166
Target:  5'- cGUGCUCCgcgaUCAGGCcccGGACGUCccgcgcgaauucGGCCCc -3'
miRNA:   3'- -CACGGGG----GGUCCG---CCUGUAGu-----------CCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.