miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 436 0.71 0.339187
Target:  5'- -cGCCCCUCGGGUcgcgGGACAcgccccCGGGUCCc -3'
miRNA:   3'- caCGGGGGGUCCG----CCUGUa-----GUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 506 0.67 0.542177
Target:  5'- -cGCCCCCgAGGCcccCAggggAGGCCCg -3'
miRNA:   3'- caCGGGGGgUCCGccuGUag--UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 571 0.69 0.417033
Target:  5'- -gGCCUCCCAGGagagGGGCcgggggCGcGGCCCg -3'
miRNA:   3'- caCGGGGGGUCCg---CCUGua----GU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 804 0.69 0.417033
Target:  5'- -gGCCCCCCcuGCGG-CG-CcGGCCCc -3'
miRNA:   3'- caCGGGGGGucCGCCuGUaGuCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 835 0.67 0.551658
Target:  5'- -gGCCauCCCCAcGCGcGGCccCGGGCCCu -3'
miRNA:   3'- caCGG--GGGGUcCGC-CUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 915 0.73 0.262793
Target:  5'- -cGCCCCCCGGGacccCGGGCGcgcgccggccucccgUCccgaAGGCCCu -3'
miRNA:   3'- caCGGGGGGUCC----GCCUGU---------------AG----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1313 0.74 0.226969
Target:  5'- -cGCCCCCuCAGGCcccacccGACGcgcgcUCGGGCCCc -3'
miRNA:   3'- caCGGGGG-GUCCGc------CUGU-----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1367 0.71 0.339187
Target:  5'- -cGCCCCUCGGGUcgcgGGACAcgccccCGGGUCCc -3'
miRNA:   3'- caCGGGGGGUCCG----CCUGUa-----GUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1437 0.67 0.542177
Target:  5'- -cGCCCCCgAGGCcccCAggggAGGCCCg -3'
miRNA:   3'- caCGGGGGgUCCGccuGUag--UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1502 0.69 0.417033
Target:  5'- -gGCCUCCCAGGagagGGGCcgggggCGcGGCCCg -3'
miRNA:   3'- caCGGGGGGUCCg---CCUGua----GU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1735 0.68 0.495683
Target:  5'- -gGCCCCCCcuGCaGGCG-CcGGCCCc -3'
miRNA:   3'- caCGGGGGGucCGcCUGUaGuCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1767 0.67 0.551658
Target:  5'- -gGCCauCCCCAcGCGcGGCccCGGGCCCu -3'
miRNA:   3'- caCGG--GGGGUcCGC-CUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1847 0.73 0.262793
Target:  5'- -cGCCCCCCGGGacccCGGGCGcgcgccggccucccgUCccgaAGGCCCu -3'
miRNA:   3'- caCGGGGGGUCC----GCCUGU---------------AG----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2245 0.74 0.226969
Target:  5'- -cGCCCCCuCAGGCcccacccGACGcgcgcUCGGGCCCc -3'
miRNA:   3'- caCGGGGG-GUCCGc------CUGU-----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2299 0.71 0.339187
Target:  5'- -cGCCCCUCGGGUcgcgGGACAcgccccCGGGUCCc -3'
miRNA:   3'- caCGGGGGGUCCG----CCUGUa-----GUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2369 0.67 0.542177
Target:  5'- -cGCCCCCgAGGCcccCAggggAGGCCCg -3'
miRNA:   3'- caCGGGGGgUCCGccuGUag--UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2419 0.77 0.144268
Target:  5'- -gGCCCCCCGaccGUGGACGUgAGGCCg -3'
miRNA:   3'- caCGGGGGGUc--CGCCUGUAgUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 2434 0.69 0.417033
Target:  5'- -gGCCUCCCAGGagagGGGCcgggggCGcGGCCCg -3'
miRNA:   3'- caCGGGGGGUCCg---CCUGua----GU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2667 0.68 0.495683
Target:  5'- -gGCCCCCCcuGCaGGCG-CcGGCCCc -3'
miRNA:   3'- caCGGGGGGucCGcCUGUaGuCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2699 0.67 0.551658
Target:  5'- -gGCCauCCCCAcGCGcGGCccCGGGCCCu -3'
miRNA:   3'- caCGG--GGGGUcCGC-CUGuaGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.