miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 52971 0.8 0.092274
Target:  5'- -gGCCCUCCgcggggcgGGGCGGGCGUCucgAGGCCCc -3'
miRNA:   3'- caCGGGGGG--------UCCGCCUGUAG---UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 46765 0.72 0.291287
Target:  5'- -cGCCucccgaCCCCGGGCGGAUggCuGGCCg -3'
miRNA:   3'- caCGG------GGGGUCCGCCUGuaGuCCGGg -5'
28768 5' -63.2 NC_006146.1 + 21030 0.71 0.317984
Target:  5'- -aGCCCUCCAGGCccuccgaGGCccCAGGCCUa -3'
miRNA:   3'- caCGGGGGGUCCGc------CUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 155464 0.66 0.628831
Target:  5'- cUGCUgCgCCAGGCaGGACugcagcCGGGCCa -3'
miRNA:   3'- cACGGgG-GGUCCG-CCUGua----GUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 99906 0.76 0.170941
Target:  5'- cUGCCCCCCGGGCGcaagagCGGGCuCCg -3'
miRNA:   3'- cACGGGGGGUCCGCcugua-GUCCG-GG- -5'
28768 5' -63.2 NC_006146.1 + 99553 0.74 0.22176
Target:  5'- -aGCCCCCgGGGCaGAgAUCGgGGUCCa -3'
miRNA:   3'- caCGGGGGgUCCGcCUgUAGU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 148184 0.73 0.237151
Target:  5'- aUGCCCacgugcgUCCAGaCGGAgcaCAUCAGGCCCa -3'
miRNA:   3'- cACGGG-------GGGUCcGCCU---GUAGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 129004 0.73 0.243219
Target:  5'- -cGUCCgCCAGGCaGACGcgacUCAGGUCCg -3'
miRNA:   3'- caCGGGgGGUCCGcCUGU----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 33141 0.72 0.27861
Target:  5'- cUGCCCCgcuCCGGGUGGGgGgu-GGCCCg -3'
miRNA:   3'- cACGGGG---GGUCCGCCUgUaguCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 17953 0.72 0.291287
Target:  5'- -aGCCCUCCAGGCcuccgaGGCccCAGGCCUa -3'
miRNA:   3'- caCGGGGGGUCCGc-----CUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 33387 0.72 0.27861
Target:  5'- cUGCCCCgcuCCGGGUGGGgGgu-GGCCCg -3'
miRNA:   3'- cACGGGG---GGUCCGCCUgUaguCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 100278 0.73 0.260425
Target:  5'- -aGCCUCCUAGcGgGGGCuggCAGGCCUg -3'
miRNA:   3'- caCGGGGGGUC-CgCCUGua-GUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 152781 0.78 0.121449
Target:  5'- aUGCCCUCCAGGuCGaaGACGUUggAGGCCCg -3'
miRNA:   3'- cACGGGGGGUCC-GC--CUGUAG--UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 146672 0.72 0.27861
Target:  5'- --cCCUCCCGGGCGGugGgc-GGCCCc -3'
miRNA:   3'- cacGGGGGGUCCGCCugUaguCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 55008 0.77 0.140783
Target:  5'- -aGCCCCCCGGGCGGGaugggggCGGGCg- -3'
miRNA:   3'- caCGGGGGGUCCGCCUgua----GUCCGgg -5'
28768 5' -63.2 NC_006146.1 + 54031 0.73 0.25285
Target:  5'- -cGCCUCCgGagggcggccaugucGGCGGugGUCAgGGCCCa -3'
miRNA:   3'- caCGGGGGgU--------------CCGCCugUAGU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 46441 0.72 0.284893
Target:  5'- -gGCCCCCaggaAGGCGG-CGgcgUAGGCCg -3'
miRNA:   3'- caCGGGGGg---UCCGCCuGUa--GUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 14875 0.71 0.317984
Target:  5'- -aGCCCUCCAGGCccuccgaGGCccCAGGCCUa -3'
miRNA:   3'- caCGGGGGGUCCGc------CUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2419 0.77 0.144268
Target:  5'- -gGCCCCCCGaccGUGGACGUgAGGCCg -3'
miRNA:   3'- caCGGGGGGUc--CGCCUGUAgUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 96817 0.74 0.232281
Target:  5'- -gGCUUCCCugguggggacGGGCGGGCAggUUGGGCCCg -3'
miRNA:   3'- caCGGGGGG----------UCCGCCUGU--AGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.