miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 129495 1.11 0.000544
Target:  5'- gGUGCCCCCCAGGCGGACAUCAGGCCCa -3'
miRNA:   3'- -CACGGGGGGUCCGCCUGUAGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 126531 0.86 0.033944
Target:  5'- -cGCCCCCCGGGCGGGgGUCuGGCaCCu -3'
miRNA:   3'- caCGGGGGGUCCGCCUgUAGuCCG-GG- -5'
28768 5' -63.2 NC_006146.1 + 167982 0.85 0.03966
Target:  5'- -aGCUCCCCGguaaacauGGUGGGCGUCAGGCCCu -3'
miRNA:   3'- caCGGGGGGU--------CCGCCUGUAGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 52971 0.8 0.092274
Target:  5'- -gGCCCUCCgcggggcgGGGCGGGCGUCucgAGGCCCc -3'
miRNA:   3'- caCGGGGGG--------UCCGCCUGUAG---UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 115964 0.79 0.099498
Target:  5'- -cGCCCCgCGGGCaGACGUCgAGGCCUa -3'
miRNA:   3'- caCGGGGgGUCCGcCUGUAG-UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 152781 0.78 0.121449
Target:  5'- aUGCCCUCCAGGuCGaaGACGUUggAGGCCCg -3'
miRNA:   3'- cACGGGGGGUCC-GC--CUGUAG--UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 55008 0.77 0.140783
Target:  5'- -aGCCCCCCGGGCGGGaugggggCGGGCg- -3'
miRNA:   3'- caCGGGGGGUCCGCCUgua----GUCCGgg -5'
28768 5' -63.2 NC_006146.1 + 2419 0.77 0.144268
Target:  5'- -gGCCCCCCGaccGUGGACGUgAGGCCg -3'
miRNA:   3'- caCGGGGGGUc--CGCCUGUAgUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 57210 0.76 0.170941
Target:  5'- -cGCCguCCCCGGGcCGGAgGcCGGGCCCg -3'
miRNA:   3'- caCGG--GGGGUCC-GCCUgUaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 99906 0.76 0.170941
Target:  5'- cUGCCCCCCGGGCGcaagagCGGGCuCCg -3'
miRNA:   3'- cACGGGGGGUCCGCcugua-GUCCG-GG- -5'
28768 5' -63.2 NC_006146.1 + 76258 0.75 0.178907
Target:  5'- cGUGgUCCCCAGgGCGGcCAUCAuggacccGGCCCa -3'
miRNA:   3'- -CACgGGGGGUC-CGCCuGUAGU-------CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 117859 0.75 0.194446
Target:  5'- -cGCCCCCCuuaccucucGGCGGcggccgcggccagccGCGUgAGGCCCa -3'
miRNA:   3'- caCGGGGGGu--------CCGCC---------------UGUAgUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 101238 0.74 0.211648
Target:  5'- aUGCCaCCCCccagcuggAGGaGGACcgCGGGCCCa -3'
miRNA:   3'- cACGG-GGGG--------UCCgCCUGuaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 31753 0.74 0.216654
Target:  5'- -cGCCCCCCcGGgGGACGggagcccccguUC-GGCCCa -3'
miRNA:   3'- caCGGGGGGuCCgCCUGU-----------AGuCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 99553 0.74 0.22176
Target:  5'- -aGCCCCCgGGGCaGAgAUCGgGGUCCa -3'
miRNA:   3'- caCGGGGGgUCCGcCUgUAGU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 2245 0.74 0.226969
Target:  5'- -cGCCCCCuCAGGCcccacccGACGcgcgcUCGGGCCCc -3'
miRNA:   3'- caCGGGGG-GUCCGc------CUGU-----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 3177 0.74 0.226969
Target:  5'- -cGCCCCCuCAGGCcccacccGACGcgcgcUCGGGCCCc -3'
miRNA:   3'- caCGGGGG-GUCCGc------CUGU-----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 1313 0.74 0.226969
Target:  5'- -cGCCCCCuCAGGCcccacccGACGcgcgcUCGGGCCCc -3'
miRNA:   3'- caCGGGGG-GUCCGc------CUGU-----AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 96817 0.74 0.232281
Target:  5'- -gGCUUCCCugguggggacGGGCGGGCAggUUGGGCCCg -3'
miRNA:   3'- caCGGGGGG----------UCCGCCUGU--AGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 73552 0.74 0.232281
Target:  5'- -aGCUCCCCGGGCgGGugGUUGuGGCCg -3'
miRNA:   3'- caCGGGGGGUCCG-CCugUAGU-CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.