miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 58530 0.66 0.758905
Target:  5'- --aUCUCUGCaagCGGCCGGUCAGc-- -3'
miRNA:   3'- cggAGAGGCGga-GCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 105827 0.66 0.758905
Target:  5'- gGCCcCUCCuGCCcCGcGCC-GCCgAGUAGa -3'
miRNA:   3'- -CGGaGAGG-CGGaGC-CGGuCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 53727 0.66 0.758905
Target:  5'- uCCUCUCCgggaGCCgCGGCUGcGCCGGg-- -3'
miRNA:   3'- cGGAGAGG----CGGaGCCGGU-CGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 54895 0.66 0.757983
Target:  5'- gGUCcgCUCgCGCCgucUGGCCGGCCuucagggaccggcAGUAGg -3'
miRNA:   3'- -CGGa-GAG-GCGGa--GCCGGUCGG-------------UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 47642 0.66 0.756136
Target:  5'- aGCCgUCUCUgGCCgCGGCCcggcccagcgcggcGGCCAGg-- -3'
miRNA:   3'- -CGG-AGAGG-CGGaGCCGG--------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 126179 0.66 0.749639
Target:  5'- gGCCa--CCGCaUCaGGCCGGCCAGcGGg -3'
miRNA:   3'- -CGGagaGGCGgAG-CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 59101 0.66 0.740276
Target:  5'- cGCCUCUCCGUCa---CCAuGCCAGgggAGg -3'
miRNA:   3'- -CGGAGAGGCGGagccGGU-CGGUCa--UC- -5'
28769 3' -60.5 NC_006146.1 + 68091 0.66 0.738392
Target:  5'- aGCC-C-CCGCgCgauccaggugggCGGCCAGCCGGUc- -3'
miRNA:   3'- -CGGaGaGGCG-Ga-----------GCCGGUCGGUCAuc -5'
28769 3' -60.5 NC_006146.1 + 13991 0.66 0.730825
Target:  5'- cGCCaC-CCagGCCUCGGCCGgGCUGGUGc -3'
miRNA:   3'- -CGGaGaGG--CGGAGCCGGU-CGGUCAUc -5'
28769 3' -60.5 NC_006146.1 + 42788 0.66 0.730825
Target:  5'- cGCgUggCCGCCUCGGCCAGgUuGgcGg -3'
miRNA:   3'- -CGgAgaGGCGGAGCCGGUCgGuCauC- -5'
28769 3' -60.5 NC_006146.1 + 115137 0.66 0.730825
Target:  5'- nGCCUCgCUGCCccUGGCCcgccGCCGGgcGg -3'
miRNA:   3'- -CGGAGaGGCGGa-GCCGGu---CGGUCauC- -5'
28769 3' -60.5 NC_006146.1 + 110436 0.66 0.730825
Target:  5'- gGCCUCUcaCCGCUccccgCGGCCuGCCGc--- -3'
miRNA:   3'- -CGGAGA--GGCGGa----GCCGGuCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 115985 0.66 0.730825
Target:  5'- gGCCUa-CUGCCggucccugaaGGCCGGCCAGa-- -3'
miRNA:   3'- -CGGAgaGGCGGag--------CCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 23452 0.66 0.721294
Target:  5'- uGCCcgUCUCgGCCUacgaGGCCcuGGCC-GUGGc -3'
miRNA:   3'- -CGG--AGAGgCGGAg---CCGG--UCGGuCAUC- -5'
28769 3' -60.5 NC_006146.1 + 100736 0.66 0.721294
Target:  5'- gGCCUCgCCggccaccagcGCCcCGGCCaggAGCCAGgcGa -3'
miRNA:   3'- -CGGAGaGG----------CGGaGCCGG---UCGGUCauC- -5'
28769 3' -60.5 NC_006146.1 + 106668 0.66 0.721294
Target:  5'- cCCUC-CCGCCcCGGCCcaGGCgCAGa-- -3'
miRNA:   3'- cGGAGaGGCGGaGCCGG--UCG-GUCauc -5'
28769 3' -60.5 NC_006146.1 + 63146 0.66 0.711692
Target:  5'- gGCCaUCUCCGCCUCGaCCAuUCucGUGGu -3'
miRNA:   3'- -CGG-AGAGGCGGAGCcGGUcGGu-CAUC- -5'
28769 3' -60.5 NC_006146.1 + 51777 0.67 0.702027
Target:  5'- gGCCUCUCUGCCcagagcCGaGuCCAGCCAc--- -3'
miRNA:   3'- -CGGAGAGGCGGa-----GC-C-GGUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 124180 0.67 0.702027
Target:  5'- gGCCUCcgcCCGCCUCGGagccgccgCGGCCGa--- -3'
miRNA:   3'- -CGGAGa--GGCGGAGCCg-------GUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 110467 0.67 0.702027
Target:  5'- aGCUUCUCgGCCaUGGCCAGgaaGGUGa -3'
miRNA:   3'- -CGGAGAGgCGGaGCCGGUCgg-UCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.