miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 170185 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 170105 0.71 0.903125
Target:  5'- cGGCgcCgc-AGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGauuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 170072 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 169254 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 169173 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 169140 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 168322 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 168241 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 168208 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 167390 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 167309 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 167276 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 166869 0.69 0.958751
Target:  5'- cGGCgg--GAGGGGGGAGCggaGGGcGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGg--CCU-CUCC- -5'
28769 5' -51.3 NC_006146.1 + 166124 0.66 0.994265
Target:  5'- ---aUCUAGgcAGGGAgGAGaCGGAGGGGg -3'
miRNA:   3'- ccgaAGAUU--UCUCU-CUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 165735 0.67 0.987147
Target:  5'- ------aGAAGAGAGAGCgGGGGucAGGg -3'
miRNA:   3'- ccgaagaUUUCUCUCUCGgCCUC--UCC- -5'
28769 5' -51.3 NC_006146.1 + 163198 0.75 0.753815
Target:  5'- uGGCUUCUGccccucAGAG-GAGCCGGGcAGGc -3'
miRNA:   3'- -CCGAAGAUu-----UCUCuCUCGGCCUcUCC- -5'
28769 5' -51.3 NC_006146.1 + 158413 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 158386 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 158329 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 157296 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.