miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 5' -58.8 NC_006146.1 + 18855 0.66 0.82303
Target:  5'- cGGGCGcugccGGGGugG-UGGaCGUgCGGGGGc -3'
miRNA:   3'- -UCCGU-----CCCCugUuACC-GCAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 157885 0.66 0.82303
Target:  5'- cAGGUAGaGGcuCGAgagcuUGGUGUCCGGGAa -3'
miRNA:   3'- -UCCGUC-CCcuGUU-----ACCGCAGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 65087 0.66 0.82303
Target:  5'- cGGCcGGGGACcccUGGguguucuuuccCGUCUGGGAGc -3'
miRNA:   3'- uCCGuCCCCUGuu-ACC-----------GCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 169773 0.66 0.814592
Target:  5'- -cGCGGGGG-CAccGGCG-CguGGAGa -3'
miRNA:   3'- ucCGUCCCCuGUuaCCGCaGguCCUC- -5'
28771 5' -58.8 NC_006146.1 + 167909 0.66 0.814592
Target:  5'- -cGCGGGGG-CAccGGCG-CguGGAGa -3'
miRNA:   3'- ucCGUCCCCuGUuaCCGCaGguCCUC- -5'
28771 5' -58.8 NC_006146.1 + 168841 0.66 0.814592
Target:  5'- -cGCGGGGG-CAccGGCG-CguGGAGa -3'
miRNA:   3'- ucCGUCCCCuGUuaCCGCaGguCCUC- -5'
28771 5' -58.8 NC_006146.1 + 50785 0.66 0.805995
Target:  5'- cGGUGGuguGGGcACAcgGGCGUCCguacggucccAGGGGg -3'
miRNA:   3'- uCCGUC---CCC-UGUuaCCGCAGG----------UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 39857 0.66 0.805995
Target:  5'- cGGCGGGGG-C--UGuGUGcCCGGGGGa -3'
miRNA:   3'- uCCGUCCCCuGuuAC-CGCaGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 37678 0.66 0.805995
Target:  5'- gGGGCuGGGGGCAAcgaGGCaaggaGcCCAGGuGa -3'
miRNA:   3'- -UCCGuCCCCUGUUa--CCG-----CaGGUCCuC- -5'
28771 5' -58.8 NC_006146.1 + 5238 0.66 0.805995
Target:  5'- cGGCcucGGGGCuGUGGgGUCCAcGGAc -3'
miRNA:   3'- uCCGuc-CCCUGuUACCgCAGGU-CCUc -5'
28771 5' -58.8 NC_006146.1 + 152892 0.66 0.805995
Target:  5'- -uGCAGGGuGGCGAUGcCGUCCAGc-- -3'
miRNA:   3'- ucCGUCCC-CUGUUACcGCAGGUCcuc -5'
28771 5' -58.8 NC_006146.1 + 95313 0.66 0.805995
Target:  5'- gGGGCAGuaGGCGcgGaGgGUCUGGGAGa -3'
miRNA:   3'- -UCCGUCccCUGUuaC-CgCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 99168 0.66 0.799886
Target:  5'- uGGCGGaGGGccagcucguagagccACcaGGUGGCGUCCgccuccaGGGAGg -3'
miRNA:   3'- uCCGUC-CCC---------------UG--UUACCGCAGG-------UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 90027 0.66 0.797246
Target:  5'- aGGuGCAGGGGgaaGCGGUGGag--CAGGAGg -3'
miRNA:   3'- -UC-CGUCCCC---UGUUACCgcagGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 11381 0.66 0.797246
Target:  5'- cAGGCAGGuGGGCAAgcUGGUGgagCUgcuGGAa -3'
miRNA:   3'- -UCCGUCC-CCUGUU--ACCGCa--GGu--CCUc -5'
28771 5' -58.8 NC_006146.1 + 144724 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 147802 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 150880 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 154560 0.66 0.797246
Target:  5'- cGGaCGaGGGACAuUGGaUGUCCgAGGAGa -3'
miRNA:   3'- uCC-GUcCCCUGUuACC-GCAGG-UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 153958 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.