miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 138030 0.67 0.984977
Target:  5'- uGCCAggcaggGACCUcgcgcCGCCCGCUUCa -3'
miRNA:   3'- gCGGUagaua-UUGGAu----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 80947 0.67 0.984977
Target:  5'- gGcCCAUCUGacaauccACCUGUACCCACCa- -3'
miRNA:   3'- gC-GGUAGAUau-----UGGAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 34200 0.67 0.984977
Target:  5'- uGCCAggcaggGACCUcgcgcCGCCCGCUUCa -3'
miRNA:   3'- gCGGUagaua-UUGGAu----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 92967 0.67 0.984977
Target:  5'- uGCUAUCUGcucuGCCUgu-CCCGCCUUc -3'
miRNA:   3'- gCGGUAGAUau--UGGAuguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 3806 0.67 0.984977
Target:  5'- aCGCgGgggAUGGCC-ACGCCCcCCUCa -3'
miRNA:   3'- -GCGgUagaUAUUGGaUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 13214 0.67 0.984977
Target:  5'- aCGCCAUCcugAaGGCCUGCggccagACCCAgUUCu -3'
miRNA:   3'- -GCGGUAGa--UaUUGGAUG------UGGGUgGAG- -5'
28773 3' -51.4 NC_006146.1 + 20800 0.67 0.984428
Target:  5'- aCGCCGUCUacggcuucacugggGUGGCCaACGgccucuuccCCUGCCUCu -3'
miRNA:   3'- -GCGGUAGA--------------UAUUGGaUGU---------GGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 56668 0.67 0.984428
Target:  5'- cCGCCGUCUGcAACgccggaucgccgggCUGCuACCC-CCUCc -3'
miRNA:   3'- -GCGGUAGAUaUUG--------------GAUG-UGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 10919 0.67 0.983086
Target:  5'- gGCCAgaccccaaCUGcgggcuCCUGCGCgCCACCUCc -3'
miRNA:   3'- gCGGUa-------GAUauu---GGAUGUG-GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 104053 0.67 0.981659
Target:  5'- aCGCUggaggagAUCUAUGACCUcugccugacggugagGCGCgaguuacuCCGCCUCa -3'
miRNA:   3'- -GCGG-------UAGAUAUUGGA---------------UGUG--------GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 61775 0.67 0.981021
Target:  5'- gGCC-UCUGUGcCCaaacauCACCCugCUCu -3'
miRNA:   3'- gCGGuAGAUAUuGGau----GUGGGugGAG- -5'
28773 3' -51.4 NC_006146.1 + 101032 0.67 0.981021
Target:  5'- gGCCGUggaccugGGCCUcuACGCCCgACCUCc -3'
miRNA:   3'- gCGGUAgaua---UUGGA--UGUGGG-UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 128385 0.67 0.980143
Target:  5'- aCGCCAUCaaccUGACCggacaaaaguucgACACCCuCUUCg -3'
miRNA:   3'- -GCGGUAGau--AUUGGa------------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 165684 0.67 0.978772
Target:  5'- gGCCGgcaagGACCUGCACCCcuAgCUCc -3'
miRNA:   3'- gCGGUagauaUUGGAUGUGGG--UgGAG- -5'
28773 3' -51.4 NC_006146.1 + 130749 0.67 0.978772
Target:  5'- uCGCCGUCaacuccaggUAUGGCCaGC-CCC-CCUCc -3'
miRNA:   3'- -GCGGUAG---------AUAUUGGaUGuGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 106280 0.67 0.978772
Target:  5'- aGaCAUCcuccUGGCCUGCGCCaugaACCUCa -3'
miRNA:   3'- gCgGUAGau--AUUGGAUGUGGg---UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 79780 0.68 0.976332
Target:  5'- cCGUCAUCUc---CCUcgGCACCCucACCUCc -3'
miRNA:   3'- -GCGGUAGAuauuGGA--UGUGGG--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 77575 0.68 0.976332
Target:  5'- gGCCGUggCUGaAACC-GCAUCCGCCUg -3'
miRNA:   3'- gCGGUA--GAUaUUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 62203 0.68 0.976332
Target:  5'- aGCCAgaagCUAaaagcCCUGCGCCgcaGCCUCu -3'
miRNA:   3'- gCGGUa---GAUauu--GGAUGUGGg--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 168419 0.68 0.976332
Target:  5'- gGCCAgCU---GCCUGCcCCCGCCg- -3'
miRNA:   3'- gCGGUaGAuauUGGAUGuGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.