miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 3129 0.68 0.973692
Target:  5'- cCGUgCGUCUcgAGCCaugcGCGCCCACC-Cg -3'
miRNA:   3'- -GCG-GUAGAuaUUGGa---UGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 161437 0.68 0.973692
Target:  5'- uGCCAgagggCgcgGACCccGCGCCCACCg- -3'
miRNA:   3'- gCGGUa----GauaUUGGa-UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 78983 0.68 0.973692
Target:  5'- aGCCAUCacGUGGagcuaaaCUGCGCCCACUa- -3'
miRNA:   3'- gCGGUAGa-UAUUg------GAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 30205 0.68 0.970846
Target:  5'- aGCCAgag--GGCCgcUGCGCCCGCCg- -3'
miRNA:   3'- gCGGUagauaUUGG--AUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 18011 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 14934 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23052 0.68 0.970846
Target:  5'- gCGCCugAUCUgcaacGUcGCCUuCACCgGCCUCa -3'
miRNA:   3'- -GCGG--UAGA-----UAuUGGAuGUGGgUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 21089 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 24167 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 27245 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23799 0.68 0.970846
Target:  5'- gGCCcgCUG-AGCCccagcuCGCCCACUUCu -3'
miRNA:   3'- gCGGuaGAUaUUGGau----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 160057 0.68 0.966823
Target:  5'- aGCCGU--AUGGCCUGCuggcuggcuucggaGCCUAUCUCa -3'
miRNA:   3'- gCGGUAgaUAUUGGAUG--------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 58986 0.68 0.964502
Target:  5'- gGCCAcCUGcAACCUggccaACAUCUGCCUCc -3'
miRNA:   3'- gCGGUaGAUaUUGGA-----UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 137126 0.68 0.964502
Target:  5'- -cCCAUCg--GACC-ACGCCCACC-Cg -3'
miRNA:   3'- gcGGUAGauaUUGGaUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 46684 0.68 0.964502
Target:  5'- cCGgCAUCgugagugGACUgaaUACACCCACCUg -3'
miRNA:   3'- -GCgGUAGaua----UUGG---AUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 35548 0.68 0.964502
Target:  5'- uGCCAUCUucccCCUccuagaaauuagGCGCCCguGCCUCc -3'
miRNA:   3'- gCGGUAGAuauuGGA------------UGUGGG--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 109092 0.69 0.960992
Target:  5'- cCGCCcgUgccguGCCggcGCGCCCACUUCu -3'
miRNA:   3'- -GCGGuaGauau-UGGa--UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 68336 0.69 0.960992
Target:  5'- aCGCUcggCUcgGACCUGCugCUggacGCCUCu -3'
miRNA:   3'- -GCGGua-GAuaUUGGAUGugGG----UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 36461 0.69 0.960992
Target:  5'- aCGCCAUCUAaAGgCUACAgCCUugUUUg -3'
miRNA:   3'- -GCGGUAGAUaUUgGAUGU-GGGugGAG- -5'
28773 3' -51.4 NC_006146.1 + 109412 0.69 0.960992
Target:  5'- gGCCGUCggucagGGCCcguUugGCCC-CCUCa -3'
miRNA:   3'- gCGGUAGaua---UUGG---AugUGGGuGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.