miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 170322 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 169391 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 168857 0.7 0.333614
Target:  5'- uCUCGGGCC-CUCUCUuggcgcugaGGCCuagggucaucguugCCGCCCc -3'
miRNA:   3'- -GAGCCCGGcGAGAGA---------CCGG--------------GGUGGGc -5'
28774 3' -65 NC_006146.1 + 168459 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 167527 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 166031 0.66 0.561682
Target:  5'- aUCgGGGgUGC-CUgUGGcCCCCGCCCc -3'
miRNA:   3'- gAG-CCCgGCGaGAgACC-GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 165936 0.67 0.488321
Target:  5'- ---aGGCCGCcaggaggcUCUCgUGGCCCCuggucCCCGg -3'
miRNA:   3'- gagcCCGGCG--------AGAG-ACCGGGGu----GGGC- -5'
28774 3' -65 NC_006146.1 + 158265 0.68 0.403565
Target:  5'- aCUCGGGg-GgaCUCUGGCCCagcCCCGg -3'
miRNA:   3'- -GAGCCCggCgaGAGACCGGGgu-GGGC- -5'
28774 3' -65 NC_006146.1 + 158164 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 157376 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 157055 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 155085 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 154298 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 153977 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 152007 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 151220 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 150899 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 148929 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 148142 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 147821 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.