miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 170085 0.66 0.953697
Target:  5'- gGAUGGccggcgggaGGGGCCggcgccgcagggggGGCCGGCGGggcgUCCCg -3'
miRNA:   3'- aCUACC---------UUCUGGa-------------CCGGCUGUU----GGGG- -5'
28775 3' -55.2 NC_006146.1 + 168613 0.74 0.562931
Target:  5'- gGAaGGAGGGCCUGGCucCGGUGACCUCa -3'
miRNA:   3'- aCUaCCUUCUGGACCG--GCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 168102 0.67 0.906409
Target:  5'- uUGGucUGGAAGGCCUGcuggcGCCuGGCGucuuCCCUg -3'
miRNA:   3'- -ACU--ACCUUCUGGAC-----CGG-CUGUu---GGGG- -5'
28775 3' -55.2 NC_006146.1 + 167094 0.67 0.900158
Target:  5'- gUGA-GGggGGCgUGGCCaucccccGCGugCCCc -3'
miRNA:   3'- -ACUaCCuuCUGgACCGGc------UGUugGGG- -5'
28775 3' -55.2 NC_006146.1 + 164442 0.66 0.938513
Target:  5'- -uGUGGggGACUUGugugagaaaccccGCCGcGCAACCUa -3'
miRNA:   3'- acUACCuuCUGGAC-------------CGGC-UGUUGGGg -5'
28775 3' -55.2 NC_006146.1 + 164214 0.66 0.947963
Target:  5'- gGAUGGAGGACUauccgGGCC-AUuguuACCaCCa -3'
miRNA:   3'- aCUACCUUCUGGa----CCGGcUGu---UGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 163580 0.66 0.938986
Target:  5'- gUGggGGAAGuCaCUGGCaugGGCAAUgCCCa -3'
miRNA:   3'- -ACuaCCUUCuG-GACCGg--CUGUUG-GGG- -5'
28775 3' -55.2 NC_006146.1 + 161983 0.66 0.947963
Target:  5'- -cGUGGGAGACCggcuccacGGUgGAUAggcACCCUg -3'
miRNA:   3'- acUACCUUCUGGa-------CCGgCUGU---UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 161949 0.72 0.684512
Target:  5'- --cUGGGAGACCcGGCUucccuuucgGGCAacGCCCCg -3'
miRNA:   3'- acuACCUUCUGGaCCGG---------CUGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 161882 0.72 0.684512
Target:  5'- --cUGGGAGACCcGGCUucccuuuugGGCAacGCCCCg -3'
miRNA:   3'- acuACCUUCUGGaCCGG---------CUGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 161815 0.68 0.886971
Target:  5'- --cUGGGAGACCcGGCUuuccuuuugGGCcacGCCCCg -3'
miRNA:   3'- acuACCUUCUGGaCCGG---------CUGu--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 161768 0.67 0.929072
Target:  5'- cGA-GGggGcGCCUGGgCGGgGGCCUg -3'
miRNA:   3'- aCUaCCuuC-UGGACCgGCUgUUGGGg -5'
28775 3' -55.2 NC_006146.1 + 160664 0.68 0.865533
Target:  5'- ---aGGGAGGCCUucagGGCCGGCAcaugACCa- -3'
miRNA:   3'- acuaCCUUCUGGA----CCGGCUGU----UGGgg -5'
28775 3' -55.2 NC_006146.1 + 159236 0.72 0.698566
Target:  5'- -cGUGGggGGCCaGGCUGGCAuuauaucggugcaacGCCgCCa -3'
miRNA:   3'- acUACCuuCUGGaCCGGCUGU---------------UGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 158286 0.69 0.857964
Target:  5'- aGGUGGccuGGCCUgGGCUGugAgGCCUCg -3'
miRNA:   3'- aCUACCuu-CUGGA-CCGGCugU-UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 158258 0.75 0.503934
Target:  5'- uUGAgccacucgGGggGACuCUGGCC--CAGCCCCg -3'
miRNA:   3'- -ACUa-------CCuuCUG-GACCGGcuGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 157561 0.69 0.842227
Target:  5'- aGGUGGccuccgcguAGGCCgcGGCCGACuccaccGCCCUg -3'
miRNA:   3'- aCUACCu--------UCUGGa-CCGGCUGu-----UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 157424 0.68 0.886971
Target:  5'- --cUGGAAGAUUUGguuguuGCCGuuGACCCCc -3'
miRNA:   3'- acuACCUUCUGGAC------CGGCugUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 157252 0.66 0.943591
Target:  5'- aGGUGGccGcuGCCUGuGuCCGGCGcuugaucgucaGCCCCa -3'
miRNA:   3'- aCUACCuuC--UGGAC-C-GGCUGU-----------UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 156855 0.67 0.918211
Target:  5'- gGAcGGAGGGCCUGGCCuGCGGg--- -3'
miRNA:   3'- aCUaCCUUCUGGACCGGcUGUUgggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.