miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 169596 0.66 0.660451
Target:  5'- gGUGGgGcCUGagggGGCGCGgcgauuguCGCCGCCCUc -3'
miRNA:   3'- -UACUgC-GACga--CCGCGU--------GCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 59587 0.66 0.640544
Target:  5'- uUGACggGCUGCUcGGaCGCAUuCUACCCa -3'
miRNA:   3'- uACUG--CGACGA-CC-GCGUGcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 160167 0.66 0.640544
Target:  5'- cAUGGCcCcgGCUGGCuCugGCUGCCCa -3'
miRNA:   3'- -UACUGcGa-CGACCGcGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 143268 0.66 0.660451
Target:  5'- gGUGACGCUgGCccGGaacuuccCugGCCACCCa -3'
miRNA:   3'- -UACUGCGA-CGa-CCgc-----GugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 167731 0.66 0.660451
Target:  5'- gGUGGgGcCUGagggGGCGCGgcgauuguCGCCGCCCUc -3'
miRNA:   3'- -UACUgC-GACga--CCGCGU--------GCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 120060 0.66 0.656474
Target:  5'- gGUGGCGCUGCU-GCGCcgggaagacggaGCC-CCCa -3'
miRNA:   3'- -UACUGCGACGAcCGCGug----------CGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 33161 0.66 0.660451
Target:  5'- -gGugGCccgGCUGG-GCAcCGCCGCgCCg -3'
miRNA:   3'- uaCugCGa--CGACCgCGU-GCGGUG-GGa -5'
28775 5' -61.6 NC_006146.1 + 142178 0.66 0.660451
Target:  5'- uGUGGCuGCUGCUGGUGCuag--ACCCUa -3'
miRNA:   3'- -UACUG-CGACGACCGCGugcggUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 168663 0.66 0.660451
Target:  5'- gGUGGgGcCUGagggGGCGCGgcgauuguCGCCGCCCUc -3'
miRNA:   3'- -UACUgC-GACga--CCGCGU--------GCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 149201 0.66 0.670376
Target:  5'- -aGGCaCUGCaGGaUGUugGCCGCCCc -3'
miRNA:   3'- uaCUGcGACGaCC-GCGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 57928 0.66 0.670376
Target:  5'- -gGGCGCUgGCcGGCGC-CGCCAUg-- -3'
miRNA:   3'- uaCUGCGA-CGaCCGCGuGCGGUGgga -5'
28775 5' -61.6 NC_006146.1 + 157114 0.66 0.658463
Target:  5'- -cGGCGUcguccagagucaGCgaGGCGCACGCCucGCCCa -3'
miRNA:   3'- uaCUGCGa-----------CGa-CCGCGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 14627 0.66 0.62958
Target:  5'- cUGGCGCUGCgugggggagcucaUGGUGCugcccaaccACGgCACCCc -3'
miRNA:   3'- uACUGCGACG-------------ACCGCG---------UGCgGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 120760 0.66 0.630577
Target:  5'- -cGACGagcGCUGGCG-GCGCCucauguCCCUg -3'
miRNA:   3'- uaCUGCga-CGACCGCgUGCGGu-----GGGA- -5'
28775 5' -61.6 NC_006146.1 + 20719 0.66 0.649509
Target:  5'- -aGAaGCUGCUGGCGgccugcgaggaccCGCGCCAaaagaCCa -3'
miRNA:   3'- uaCUgCGACGACCGC-------------GUGCGGUg----GGa -5'
28775 5' -61.6 NC_006146.1 + 127527 0.66 0.650504
Target:  5'- -aGcCGCUGCUGccccCGCuaaGCCACCCc -3'
miRNA:   3'- uaCuGCGACGACc---GCGug-CGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 110292 0.66 0.650504
Target:  5'- cAUGAUgGCcucgGCguaGGCGUucauCGCCGCCCUg -3'
miRNA:   3'- -UACUG-CGa---CGa--CCGCGu---GCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 123363 0.66 0.660451
Target:  5'- -gGA-GCU-CUGGCGCugGCCggggGCCCc -3'
miRNA:   3'- uaCUgCGAcGACCGCGugCGG----UGGGa -5'
28775 5' -61.6 NC_006146.1 + 50484 0.66 0.670376
Target:  5'- uUGACGUUGaUGGCcagGUugGCC-CCCa -3'
miRNA:   3'- uACUGCGACgACCG---CGugCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 128528 0.66 0.670376
Target:  5'- -gGACGUUGC-GGCuCACGaCCGCCa- -3'
miRNA:   3'- uaCUGCGACGaCCGcGUGC-GGUGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.