miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 159618 0.84 0.046765
Target:  5'- cUGGCGCUGCUGGgGCACGCCuuCCg -3'
miRNA:   3'- uACUGCGACGACCgCGUGCGGugGGa -5'
28775 5' -61.6 NC_006146.1 + 98411 0.67 0.591783
Target:  5'- -aGGCGCUGCaGccaggcacggggaaGCGCccagaaccgguuucgGCGCCGCCCg -3'
miRNA:   3'- uaCUGCGACGaC--------------CGCG---------------UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 158859 0.67 0.600712
Target:  5'- cAUGGgGCUGgUGGcCGCAC-CCGCCa- -3'
miRNA:   3'- -UACUgCGACgACC-GCGUGcGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 149201 0.66 0.670376
Target:  5'- -aGGCaCUGCaGGaUGUugGCCGCCCc -3'
miRNA:   3'- uaCUGcGACGaCC-GCGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 157715 0.7 0.430918
Target:  5'- uUGAgcCGCUGCuUGGCGUAgGUCACCa- -3'
miRNA:   3'- uACU--GCGACG-ACCGCGUgCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 131219 0.69 0.439661
Target:  5'- -cGGCGCUGCaGGCccaggaGCcCGCCGCCUc -3'
miRNA:   3'- uaCUGCGACGaCCG------CGuGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 55939 0.68 0.494122
Target:  5'- cGUGG-GCUGCUGcGUGCcccccgccauCGCCGCCCa -3'
miRNA:   3'- -UACUgCGACGAC-CGCGu---------GCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 128460 0.68 0.512959
Target:  5'- -cGGcCGCcaUGCUGGCgGCGCGC-ACCCa -3'
miRNA:   3'- uaCU-GCG--ACGACCG-CGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 126116 0.68 0.540774
Target:  5'- -aGACGCUGCgccccccUGaGCccgGCACGgCACCCUc -3'
miRNA:   3'- uaCUGCGACG-------AC-CG---CGUGCgGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 170589 0.67 0.571044
Target:  5'- aAUGACaGCUggGCgUGGCgaGCGCGCCggGCCCg -3'
miRNA:   3'- -UACUG-CGA--CG-ACCG--CGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 168443 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 159328 0.68 0.532084
Target:  5'- uUGAgGCUgGCcGGCGUcucguGCGCCGCCUc -3'
miRNA:   3'- uACUgCGA-CGaCCGCG-----UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 167803 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 169375 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 168735 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 56860 0.68 0.522488
Target:  5'- -cGGCaGCUuugGCUGGgGCugGCgGCCCc -3'
miRNA:   3'- uaCUG-CGA---CGACCgCGugCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 170306 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 53026 0.67 0.600712
Target:  5'- --cACGCgGCUGGcCGCGgcCGCCGCCg- -3'
miRNA:   3'- uacUGCGaCGACC-GCGU--GCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 169667 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 116076 0.69 0.483898
Target:  5'- aAUGugGCgacgucCUGGUGCAUgguggcgGCCACCCg -3'
miRNA:   3'- -UACugCGac----GACCGCGUG-------CGGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.