miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 124327 1.06 0.001413
Target:  5'- cAUGACGCUGCUGGCGCACGCCACCCUg -3'
miRNA:   3'- -UACUGCGACGACCGCGUGCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 159618 0.84 0.046765
Target:  5'- cUGGCGCUGCUGGgGCACGCCuuCCg -3'
miRNA:   3'- uACUGCGACGACCgCGUGCGGugGGa -5'
28775 5' -61.6 NC_006146.1 + 124432 0.78 0.122356
Target:  5'- aAUGACGCUGCUGGUcgGCACG-CAUCCg -3'
miRNA:   3'- -UACUGCGACGACCG--CGUGCgGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 42431 0.78 0.13537
Target:  5'- -aGACGCaGCUGGgUGCGCGCCGCCa- -3'
miRNA:   3'- uaCUGCGaCGACC-GCGUGCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 93626 0.76 0.173635
Target:  5'- -cGGCGCUGUaagucacucugUGGCGCuCGCCACCUUc -3'
miRNA:   3'- uaCUGCGACG-----------ACCGCGuGCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 167803 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 169667 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 168735 0.74 0.249001
Target:  5'- -gGGCGUgGCgGGCGCGCGUgGCCCg -3'
miRNA:   3'- uaCUGCGaCGaCCGCGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21054 0.73 0.260881
Target:  5'- -aGACGCUGCgcuucgccgaGGCcCugGCCGCCCa -3'
miRNA:   3'- uaCUGCGACGa---------CCGcGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 20864 0.73 0.262702
Target:  5'- cGUGACGCUGCaggGGCGCACgaugcuggagcggGCCaaggccuucguggagGCCCUg -3'
miRNA:   3'- -UACUGCGACGa--CCGCGUG-------------CGG---------------UGGGA- -5'
28775 5' -61.6 NC_006146.1 + 118955 0.73 0.285368
Target:  5'- -cGGCGCcaGUUGGCGCGCagaccgcaccgggGCCGCCCg -3'
miRNA:   3'- uaCUGCGa-CGACCGCGUG-------------CGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 43219 0.73 0.286019
Target:  5'- -gGGCGCUGCUGGUGagaggaGCCcCCCUg -3'
miRNA:   3'- uaCUGCGACGACCGCgug---CGGuGGGA- -5'
28775 5' -61.6 NC_006146.1 + 168112 0.7 0.396995
Target:  5'- -aGGC-CUGCUGGCGCcugGCGUCuuCCCUg -3'
miRNA:   3'- uaCUGcGACGACCGCG---UGCGGu-GGGA- -5'
28775 5' -61.6 NC_006146.1 + 102782 0.7 0.413743
Target:  5'- cGUGGCGCcGCUcccgcGGaccgGCugGCCGCCCa -3'
miRNA:   3'- -UACUGCGaCGA-----CCg---CGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 157715 0.7 0.430918
Target:  5'- uUGAgcCGCUGCuUGGCGUAgGUCACCa- -3'
miRNA:   3'- uACU--GCGACG-ACCGCGUgCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 131219 0.69 0.439661
Target:  5'- -cGGCGCUGCaGGCccaggaGCcCGCCGCCUc -3'
miRNA:   3'- uaCUGCGACGaCCG------CGuGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 122850 0.69 0.466481
Target:  5'- -cGcACGCUGCccggGGCGCugGaCgACCCg -3'
miRNA:   3'- uaC-UGCGACGa---CCGCGugC-GgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 116076 0.69 0.483898
Target:  5'- aAUGugGCgacgucCUGGUGCAUgguggcgGCCACCCg -3'
miRNA:   3'- -UACugCGac----GACCGCGUG-------CGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 55939 0.68 0.494122
Target:  5'- cGUGG-GCUGCUGcGUGCcccccgccauCGCCGCCCa -3'
miRNA:   3'- -UACUgCGACGAC-CGCGu---------GCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21802 0.68 0.512959
Target:  5'- -gGAUGCcg--GGCGCGCGCC-CCCg -3'
miRNA:   3'- uaCUGCGacgaCCGCGUGCGGuGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.