miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 894 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 1826 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 2758 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 3690 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 11344 0.68 0.551459
Target:  5'- -aGACGCUGUacacgggccUGGCGCagGCGCUGCgCg -3'
miRNA:   3'- uaCUGCGACG---------ACCGCG--UGCGGUGgGa -5'
28775 5' -61.6 NC_006146.1 + 14627 0.66 0.62958
Target:  5'- cUGGCGCUGCgugggggagcucaUGGUGCugcccaaccACGgCACCCc -3'
miRNA:   3'- uACUGCGACG-------------ACCGCG---------UGCgGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 16201 0.67 0.610654
Target:  5'- gGUGG-GCUGCaucugGGCGCAgaCCACCCa -3'
miRNA:   3'- -UACUgCGACGa----CCGCGUgcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 20719 0.66 0.649509
Target:  5'- -aGAaGCUGCUGGCGgccugcgaggaccCGCGCCAaaagaCCa -3'
miRNA:   3'- uaCUgCGACGACCGC-------------GUGCGGUg----GGa -5'
28775 5' -61.6 NC_006146.1 + 20864 0.73 0.262702
Target:  5'- cGUGACGCUGCaggGGCGCACgaugcuggagcggGCCaaggccuucguggagGCCCUg -3'
miRNA:   3'- -UACUGCGACGa--CCGCGUG-------------CGG---------------UGGGA- -5'
28775 5' -61.6 NC_006146.1 + 21054 0.73 0.260881
Target:  5'- -aGACGCUGCgcuucgccgaGGCcCugGCCGCCCa -3'
miRNA:   3'- uaCUGCGACGa---------CCGcGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21255 0.67 0.610654
Target:  5'- --cGCGCUGCcGGCGCGUGCUcgACCUg -3'
miRNA:   3'- uacUGCGACGaCCGCGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 21802 0.68 0.512959
Target:  5'- -gGAUGCcg--GGCGCGCGCC-CCCg -3'
miRNA:   3'- uaCUGCGacgaCCGCGUGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 25855 0.67 0.600712
Target:  5'- --aGCGCcaggGCUGcGCGCucACGCUGCCCg -3'
miRNA:   3'- uacUGCGa---CGAC-CGCG--UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 33161 0.66 0.660451
Target:  5'- -gGugGCccgGCUGG-GCAcCGCCGCgCCg -3'
miRNA:   3'- uaCugCGa--CGACCgCGU-GCGGUG-GGa -5'
28775 5' -61.6 NC_006146.1 + 41481 0.67 0.610654
Target:  5'- gGUGAUGUUGCUgggccuuggGGUGCGCGgggacgaCGCCCg -3'
miRNA:   3'- -UACUGCGACGA---------CCGCGUGCg------GUGGGa -5'
28775 5' -61.6 NC_006146.1 + 42431 0.78 0.13537
Target:  5'- -aGACGCaGCUGGgUGCGCGCCGCCa- -3'
miRNA:   3'- uaCUGCGaCGACC-GCGUGCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 43219 0.73 0.286019
Target:  5'- -gGGCGCUGCUGGUGagaggaGCCcCCCUg -3'
miRNA:   3'- uaCUGCGACGACCGCgug---CGGuGGGA- -5'
28775 5' -61.6 NC_006146.1 + 50484 0.66 0.670376
Target:  5'- uUGACGUUGaUGGCcagGUugGCC-CCCa -3'
miRNA:   3'- uACUGCGACgACCG---CGugCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 53026 0.67 0.600712
Target:  5'- --cACGCgGCUGGcCGCGgcCGCCGCCg- -3'
miRNA:   3'- uacUGCGaCGACC-GCGU--GCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 55939 0.68 0.494122
Target:  5'- cGUGG-GCUGCUGcGUGCcccccgccauCGCCGCCCa -3'
miRNA:   3'- -UACUgCGACGAC-CGCGu---------GCGGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.