miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 116092 0.66 0.547789
Target:  5'- cCCUCCGCCgGguCCUCuccaacGAGCUGCCcaagGCg -3'
miRNA:   3'- cGGAGGCGGgC--GGAGc-----CUCGGCGG----CG- -5'
28776 3' -65.9 NC_006146.1 + 117851 0.66 0.493556
Target:  5'- uCC-CCaCCCGCCccccuuaccucUCGGcGGCgGCCGCg -3'
miRNA:   3'- cGGaGGcGGGCGG-----------AGCC-UCGgCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 48224 0.66 0.493556
Target:  5'- gGCCUggCgCGCCugggugagCGCCgcgCGGAGggcccCCGCCGCc -3'
miRNA:   3'- -CGGA--G-GCGG--------GCGGa--GCCUC-----GGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 99901 0.66 0.547789
Target:  5'- cGCCUCUGCCC-CC-CGGgcgcaagagcgGGCUccggGUCGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGaGCC-----------UCGG----CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 38669 0.66 0.493556
Target:  5'- aGgUUCUGCCCgGCCgCGaGAGCUGCCu- -3'
miRNA:   3'- -CgGAGGCGGG-CGGaGC-CUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 64645 0.66 0.493556
Target:  5'- uCUUCCGCCgggGCCa-GGGGCaCGUCGCc -3'
miRNA:   3'- cGGAGGCGGg--CGGagCCUCG-GCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 55921 0.66 0.493556
Target:  5'- gGCCUUgaUGUCCGCggcCGuGGGCUGCUGCg -3'
miRNA:   3'- -CGGAG--GCGGGCGga-GC-CUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 156097 0.66 0.497099
Target:  5'- uCCUCCgGCCCGgC-CGGccucuccuuccccucAGCCGCCa- -3'
miRNA:   3'- cGGAGG-CGGGCgGaGCC---------------UCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 33232 0.66 0.502435
Target:  5'- aGCCggguggCCGCCgGCggguccgcCGG-GCCGCUGCc -3'
miRNA:   3'- -CGGa-----GGCGGgCGga------GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 795 0.66 0.501544
Target:  5'- cGCC-CCGCCgGCCcccccugCGGcGCCGgccccucCCGCc -3'
miRNA:   3'- -CGGaGGCGGgCGGa------GCCuCGGC-------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 24757 0.66 0.502435
Target:  5'- aGCCUCCG-CCGCCUgCGuc-CCGCUGa -3'
miRNA:   3'- -CGGAGGCgGGCGGA-GCcucGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 62600 0.66 0.511383
Target:  5'- gGCgUCCGCCgcagGCaaugagCgGGAGCUGCUGCg -3'
miRNA:   3'- -CGgAGGCGGg---CGga----G-CCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 128019 0.66 0.539519
Target:  5'- aGCgUCgGCCCGCaaaguuaaauacaGGAGCUGCCu- -3'
miRNA:   3'- -CGgAGgCGGGCGgag----------CCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 71982 0.66 0.538603
Target:  5'- aCCUCCGCCCaucCUUUGGAGgagaccCUGgCGCg -3'
miRNA:   3'- cGGAGGCGGGc--GGAGCCUC------GGCgGCG- -5'
28776 3' -65.9 NC_006146.1 + 70734 0.66 0.538603
Target:  5'- gGCUUaUUGCCCcCCUcgCGGAcGCCGCCGa -3'
miRNA:   3'- -CGGA-GGCGGGcGGA--GCCU-CGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 129841 0.66 0.537687
Target:  5'- cGCCcCCGUCCGagcgagcCCUCGGAaGCUGUCc- -3'
miRNA:   3'- -CGGaGGCGGGC-------GGAGCCU-CGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 122989 0.66 0.520396
Target:  5'- uCCUCCagGCCaCGggggacuucuUCUCGGAGCUGCUGa -3'
miRNA:   3'- cGGAGG--CGG-GC----------GGAGCCUCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 110280 0.66 0.520396
Target:  5'- aGCCccgUCUGCCaugaugGCCUCGGcguaGGCguucauCGCCGCc -3'
miRNA:   3'- -CGG---AGGCGGg-----CGGAGCC----UCG------GCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 42705 0.66 0.517685
Target:  5'- gGCCcggcgCCGCggcgccccccugggCCGCCUccCGGcGUCGCUGCa -3'
miRNA:   3'- -CGGa----GGCG--------------GGCGGA--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 24396 0.66 0.512281
Target:  5'- cGCCUUCGCUCuCCggguuuacguuccaGGAgGCCGCCuGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGag------------CCU-CGGCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.