miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 392 0.69 0.336575
Target:  5'- gGCC-CCGCCCGCCgcgcgcugggggucCGGGGaagccccCCGCuCGCc -3'
miRNA:   3'- -CGGaGGCGGGCGGa-------------GCCUC-------GGCG-GCG- -5'
28776 3' -65.9 NC_006146.1 + 489 0.67 0.433604
Target:  5'- uGUCUuuGCCUuaUUgacCGGGGCCGCUGUa -3'
miRNA:   3'- -CGGAggCGGGcgGA---GCCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 742 0.73 0.206669
Target:  5'- cCCUCaGCCC-CCggcCGGcGCCGCCGCg -3'
miRNA:   3'- cGGAGgCGGGcGGa--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 795 0.66 0.501544
Target:  5'- cGCC-CCGCCgGCCcccccugCGGcGCCGgccccucCCGCc -3'
miRNA:   3'- -CGGaGGCGGgCGGa------GCCuCGGC-------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 1144 0.67 0.432779
Target:  5'- uGCCcCCGCgaggguccccgggCCGCCcCGGGGCUcccCCGCg -3'
miRNA:   3'- -CGGaGGCG-------------GGCGGaGCCUCGGc--GGCG- -5'
28776 3' -65.9 NC_006146.1 + 1356 0.67 0.433604
Target:  5'- aGCCccCCGCUCGCCccUCGG-GUCGCgGg -3'
miRNA:   3'- -CGGa-GGCGGGCGG--AGCCuCGGCGgCg -5'
28776 3' -65.9 NC_006146.1 + 1673 0.73 0.206669
Target:  5'- cCCUCaGCCC-CCggcCGGcGCCGCCGCg -3'
miRNA:   3'- cGGAGgCGGGcGGa--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 2076 0.67 0.432779
Target:  5'- uGCCcCCGCgaggguccccgggCCGCCcCGGGGCUcccCCGCg -3'
miRNA:   3'- -CGGaGGCG-------------GGCGGaGCCUCGGc--GGCG- -5'
28776 3' -65.9 NC_006146.1 + 2288 0.67 0.433604
Target:  5'- aGCCccCCGCUCGCCccUCGG-GUCGCgGg -3'
miRNA:   3'- -CGGa-GGCGGGCGG--AGCCuCGGCGgCg -5'
28776 3' -65.9 NC_006146.1 + 2605 0.73 0.206669
Target:  5'- cCCUCaGCCC-CCggcCGGcGCCGCCGCg -3'
miRNA:   3'- cGGAGgCGGGcGGa--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 3008 0.67 0.432779
Target:  5'- uGCCcCCGCgaggguccccgggCCGCCcCGGGGCUcccCCGCg -3'
miRNA:   3'- -CGGaGGCG-------------GGCGGaGCCUCGGc--GGCG- -5'
28776 3' -65.9 NC_006146.1 + 3220 0.67 0.433604
Target:  5'- aGCCccCCGCUCGCCccUCGG-GUCGCgGg -3'
miRNA:   3'- -CGGa-GGCGGGCGG--AGCCuCGGCGgCg -5'
28776 3' -65.9 NC_006146.1 + 3537 0.73 0.206669
Target:  5'- cCCUCaGCCC-CCggcCGGcGCCGCCGCg -3'
miRNA:   3'- cGGAGgCGGGcGGa--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 5229 0.69 0.370574
Target:  5'- gGUCcUUGCCgGCCUCGGGGCUGUgGg -3'
miRNA:   3'- -CGGaGGCGGgCGGAGCCUCGGCGgCg -5'
28776 3' -65.9 NC_006146.1 + 9135 0.71 0.264376
Target:  5'- gGCCcCCGCCCaggcgcccCCUCGGAccucaGCCGCCa- -3'
miRNA:   3'- -CGGaGGCGGGc-------GGAGCCU-----CGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 9451 0.68 0.417263
Target:  5'- aGCCUacCCGCCCcacgcGCCUuggguucccgCGGGGCCacacCCGCc -3'
miRNA:   3'- -CGGA--GGCGGG-----CGGA----------GCCUCGGc---GGCG- -5'
28776 3' -65.9 NC_006146.1 + 12944 0.67 0.458797
Target:  5'- gGCC-CCGCCCggugGCCUUGGGGuaGCUc- -3'
miRNA:   3'- -CGGaGGCGGG----CGGAGCCUCggCGGcg -5'
28776 3' -65.9 NC_006146.1 + 13195 0.68 0.425387
Target:  5'- gGCCUCgcuccgggCGCCU-CCUCGGguucAGCCGCUGg -3'
miRNA:   3'- -CGGAG--------GCGGGcGGAGCC----UCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 13320 0.72 0.242005
Target:  5'- gGUCUCCGCUCcCCUCuGAGCC-CCGUu -3'
miRNA:   3'- -CGGAGGCGGGcGGAGcCUCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 14386 0.71 0.288395
Target:  5'- cGCCUcCCGCUCcCCUCcGGGCCGCguaCGCc -3'
miRNA:   3'- -CGGA-GGCGGGcGGAGcCUCGGCG---GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.