miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 130456 0.81 0.052197
Target:  5'- gGCCauugCCGCacCCGCCUaCGGGGCCGCUGCc -3'
miRNA:   3'- -CGGa---GGCG--GGCGGA-GCCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 41516 0.72 0.231423
Target:  5'- gGCUUCCGgCC-CCagaGGAgGCCGCCGCu -3'
miRNA:   3'- -CGGAGGCgGGcGGag-CCU-CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 16398 0.72 0.242005
Target:  5'- gGUCUCCGCUCcCCUCuGAGCC-CCGUu -3'
miRNA:   3'- -CGGAGGCGGGcGGAGcCUCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 99901 0.66 0.547789
Target:  5'- cGCCUCUGCCC-CC-CGGgcgcaagagcgGGCUccggGUCGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGaGCC-----------UCGG----CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 117526 0.77 0.109327
Target:  5'- gGUCUCaCGCCUcucCCUCGGGGCCuggGCCGCa -3'
miRNA:   3'- -CGGAG-GCGGGc--GGAGCCUCGG---CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 116224 0.76 0.129393
Target:  5'- -gCUCCGUCCGCUugucggcgggauUCGGGGCCaGCUGCu -3'
miRNA:   3'- cgGAGGCGGGCGG------------AGCCUCGG-CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 54938 0.75 0.152814
Target:  5'- gGCCUCgaCGUCUGCCcgCGGGgcgaccGCCGCCGCc -3'
miRNA:   3'- -CGGAG--GCGGGCGGa-GCCU------CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 48753 0.74 0.167868
Target:  5'- uCCUUgCGCCCgGCCUCcagcAGCCGCCGCa -3'
miRNA:   3'- cGGAG-GCGGG-CGGAGcc--UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 128131 0.73 0.206669
Target:  5'- gGCCacgcgCCGCCUGCaccugUCGGcccuGCUGCCGCa -3'
miRNA:   3'- -CGGa----GGCGGGCGg----AGCCu---CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 159265 0.72 0.22628
Target:  5'- uGCaacgCCGCCacgcggGCCUCGGGGCCcUCGCa -3'
miRNA:   3'- -CGga--GGCGGg-----CGGAGCCUCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 155605 0.72 0.216284
Target:  5'- gGCCUCCgGCCCcuccucccccucGCUcCGGuucAGCCGCUGCa -3'
miRNA:   3'- -CGGAGG-CGGG------------CGGaGCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 124392 0.73 0.188545
Target:  5'- aGCCUCCGCCCagaguGCCUCcGGGCUcaaGCCcgGCa -3'
miRNA:   3'- -CGGAGGCGGG-----CGGAGcCUCGG---CGG--CG- -5'
28776 3' -65.9 NC_006146.1 + 34216 0.79 0.083598
Target:  5'- cGCg-CCGCCCGCUUCauggggggGGAgGCCGCCGCa -3'
miRNA:   3'- -CGgaGGCGGGCGGAG--------CCU-CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 137789 0.72 0.221234
Target:  5'- gGCCuggUCCGCcggauCCGCUUCGGGGguCCGCCGg -3'
miRNA:   3'- -CGG---AGGCG-----GGCGGAGCCUC--GGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 138046 0.79 0.083598
Target:  5'- cGCg-CCGCCCGCUUCauggggggGGAgGCCGCCGCa -3'
miRNA:   3'- -CGgaGGCGGGCGGAG--------CCU-CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 85592 0.74 0.175884
Target:  5'- gGCagCCGCCCGCCUCGGAaGCUGgcaCCGg -3'
miRNA:   3'- -CGgaGGCGGGCGGAGCCU-CGGC---GGCg -5'
28776 3' -65.9 NC_006146.1 + 157217 0.72 0.223241
Target:  5'- gGCCUCCagGCCCGCCcugauguucucaaucUCauaGGuGGCCGCUGCc -3'
miRNA:   3'- -CGGAGG--CGGGCGG---------------AG---CC-UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 13320 0.72 0.242005
Target:  5'- gGUCUCCGCUCcCCUCuGAGCC-CCGUu -3'
miRNA:   3'- -CGGAGGCGGGcGGAGcCUCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 153468 0.79 0.084423
Target:  5'- cCCUCCGCCUGCCUCcGucgacggcgcacaauGGCCGCUGCc -3'
miRNA:   3'- cGGAGGCGGGCGGAGcC---------------UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 47479 0.76 0.132523
Target:  5'- aGCCUCUucaGCUCGCCgaucUGGucuucGGCCGCCGCg -3'
miRNA:   3'- -CGGAGG---CGGGCGGa---GCC-----UCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.