miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 124180 1.12 0.000316
Target:  5'- gGCCUCCGCCCGCCUCGGAGCCGCCGCg -3'
miRNA:   3'- -CGGAGGCGGGCGGAGCCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 147267 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 153423 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 150345 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 156501 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 144189 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 130456 0.81 0.052197
Target:  5'- gGCCauugCCGCacCCGCCUaCGGGGCCGCUGCc -3'
miRNA:   3'- -CGGa---GGCG--GGCGGA-GCCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 114101 0.81 0.057675
Target:  5'- aGCC-CCGCCCGCCagacGGCCGCCGCg -3'
miRNA:   3'- -CGGaGGCGGGCGGagccUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 34216 0.79 0.083598
Target:  5'- cGCg-CCGCCCGCUUCauggggggGGAgGCCGCCGCa -3'
miRNA:   3'- -CGgaGGCGGGCGGAG--------CCU-CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 138046 0.79 0.083598
Target:  5'- cGCg-CCGCCCGCUUCauggggggGGAgGCCGCCGCa -3'
miRNA:   3'- -CGgaGGCGGGCGGAG--------CCU-CGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 117147 0.79 0.084423
Target:  5'- aCCUCCGCCCGCCgcccgucuucgcccCGGcgcAGCCGCgGCu -3'
miRNA:   3'- cGGAGGCGGGCGGa-------------GCC---UCGGCGgCG- -5'
28776 3' -65.9 NC_006146.1 + 153468 0.79 0.084423
Target:  5'- cCCUCCGCCUGCCUCcGucgacggcgcacaauGGCCGCUGCc -3'
miRNA:   3'- cGGAGGCGGGCGGAGcC---------------UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 117526 0.77 0.109327
Target:  5'- gGUCUCaCGCCUcucCCUCGGGGCCuggGCCGCa -3'
miRNA:   3'- -CGGAG-GCGGGc--GGAGCCUCGG---CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 114667 0.76 0.117543
Target:  5'- cGCCUCCGCCC-CCgCGGAcCCGCUGg -3'
miRNA:   3'- -CGGAGGCGGGcGGaGCCUcGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 120799 0.76 0.123336
Target:  5'- cGCCggUCCGCgUgGCCggacaagCGGGGCCGCCGUg -3'
miRNA:   3'- -CGG--AGGCG-GgCGGa------GCCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 116224 0.76 0.129393
Target:  5'- -gCUCCGUCCGCUugucggcgggauUCGGGGCCaGCUGCu -3'
miRNA:   3'- cgGAGGCGGGCGG------------AGCCUCGG-CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 47479 0.76 0.132523
Target:  5'- aGCCUCUucaGCUCGCCgaucUGGucuucGGCCGCCGCg -3'
miRNA:   3'- -CGGAGG---CGGGCGGa---GCC-----UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 121369 0.75 0.138995
Target:  5'- gGCCUCCGCCC-CCagaGGAGCCcCCGg -3'
miRNA:   3'- -CGGAGGCGGGcGGag-CCUCGGcGGCg -5'
28776 3' -65.9 NC_006146.1 + 166725 0.75 0.142338
Target:  5'- cGCCga-GCCCGUCUCGGGGCaggaggccgaGCCGUa -3'
miRNA:   3'- -CGGaggCGGGCGGAGCCUCGg---------CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 122056 0.75 0.145755
Target:  5'- gGCUUCgCGCCCGCCUCcgaGGAGCaGCUGa -3'
miRNA:   3'- -CGGAG-GCGGGCGGAG---CCUCGgCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.