miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 5' -55.6 NC_006146.1 + 38132 0.66 0.938986
Target:  5'- cCUGCAGcGACcg--UGCGGGACCgCGg -3'
miRNA:   3'- cGACGUC-CUGcaagACGUCCUGGaGC- -5'
28777 5' -55.6 NC_006146.1 + 96810 0.66 0.93113
Target:  5'- aGCUGCaggcuucccuggugGGGACGggCggGCAGGuugggcccgcuucaGCCUCu -3'
miRNA:   3'- -CGACG--------------UCCUGCaaGa-CGUCC--------------UGGAGc -5'
28777 5' -55.6 NC_006146.1 + 165755 0.66 0.929072
Target:  5'- --aGCAGGGCG-UCUcGCAGGGCg--- -3'
miRNA:   3'- cgaCGUCCUGCaAGA-CGUCCUGgagc -5'
28777 5' -55.6 NC_006146.1 + 100712 0.66 0.918212
Target:  5'- cGCUGCGGGG-GUgggUGUGGGACCg-- -3'
miRNA:   3'- -CGACGUCCUgCAag-ACGUCCUGGagc -5'
28777 5' -55.6 NC_006146.1 + 75211 0.66 0.918212
Target:  5'- --cGUAGG-CGUacuugccCUGCAGGAUCUCa -3'
miRNA:   3'- cgaCGUCCuGCAa------GACGUCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 149987 0.66 0.918212
Target:  5'- cCUGCAGGuCGgccggaCU-CAGGGCCUCc -3'
miRNA:   3'- cGACGUCCuGCaa----GAcGUCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 53765 0.66 0.918212
Target:  5'- gGCgGCGGG-CGgaggUCUcGCcggacgAGGGCCUCGg -3'
miRNA:   3'- -CGaCGUCCuGCa---AGA-CG------UCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 150151 0.67 0.912428
Target:  5'- uGCUGCuuguccAGGAUGgUCUuuuggcGCGGGuCCUCGc -3'
miRNA:   3'- -CGACG------UCCUGCaAGA------CGUCCuGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 132099 0.67 0.906409
Target:  5'- nGCUGCA-GAUGUgcaccCcGCAGGACUUCc -3'
miRNA:   3'- -CGACGUcCUGCAa----GaCGUCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 41466 0.67 0.900159
Target:  5'- gGCggugGCAGcGGCGgugaugUUGCuGGGCCUUGg -3'
miRNA:   3'- -CGa---CGUC-CUGCaa----GACGuCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 115402 0.67 0.900159
Target:  5'- cGCgUGCAGGAgGcagCUgGCGgccGGGCCUCGu -3'
miRNA:   3'- -CG-ACGUCCUgCaa-GA-CGU---CCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 55313 0.67 0.900159
Target:  5'- -gUGCAGGGCGaagcCUGaCAGGcUCUCGa -3'
miRNA:   3'- cgACGUCCUGCaa--GAC-GUCCuGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 59069 0.67 0.893678
Target:  5'- --cGCAGGGCGacgagcUCuUGCuGGGCCUCc -3'
miRNA:   3'- cgaCGUCCUGCa-----AG-ACGuCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 47285 0.67 0.889681
Target:  5'- cCUGCAGaACGUcCUGCAgccgggacuccucccGGGCCUCc -3'
miRNA:   3'- cGACGUCcUGCAaGACGU---------------CCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 52461 0.67 0.886971
Target:  5'- cGUUGUAGc-CGccgUGCAGGACCUCGg -3'
miRNA:   3'- -CGACGUCcuGCaagACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 11404 0.67 0.877209
Target:  5'- aGCUGCuGGAaaagcagagcCUGCAGGACCa-- -3'
miRNA:   3'- -CGACGuCCUgcaa------GACGUCCUGGagc -5'
28777 5' -55.6 NC_006146.1 + 168246 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 169178 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 167314 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 114352 0.68 0.861016
Target:  5'- cCUGgAGuaGACGUuaaacaggagaaucuUCUGUAGGACCUCc -3'
miRNA:   3'- cGACgUC--CUGCA---------------AGACGUCCUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.