miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 5' -56.9 NC_006146.1 + 71824 0.66 0.894786
Target:  5'- -aCCugGCUgCGGGcCCUCCA-CCACu -3'
miRNA:   3'- aaGGugCGG-GUUCaGGAGGUaGGUGc -5'
28779 5' -56.9 NC_006146.1 + 57896 0.66 0.894786
Target:  5'- cUCCAuCGCCuCAAGgCCgagUCCGUCaCGCGc -3'
miRNA:   3'- aAGGU-GCGG-GUUCaGG---AGGUAG-GUGC- -5'
28779 5' -56.9 NC_006146.1 + 146709 0.66 0.894786
Target:  5'- cUCgCAgGCCCAGcccUCCUCUgcccuGUCCACGu -3'
miRNA:   3'- aAG-GUgCGGGUUc--AGGAGG-----UAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 53312 0.66 0.890814
Target:  5'- -cCCugGCCgGAGUCCgagcccgaggaggcCCGgcggCCGCGg -3'
miRNA:   3'- aaGGugCGGgUUCAGGa-------------GGUa---GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 156076 0.66 0.888122
Target:  5'- -cCCGgGCCCGAGaccgugcccUCCUCCggCC-CGg -3'
miRNA:   3'- aaGGUgCGGGUUC---------AGGAGGuaGGuGC- -5'
28779 5' -56.9 NC_006146.1 + 122687 0.66 0.888122
Target:  5'- -cCCagGCGCgCCAGGcCCUCCAgUCCcCGg -3'
miRNA:   3'- aaGG--UGCG-GGUUCaGGAGGU-AGGuGC- -5'
28779 5' -56.9 NC_006146.1 + 148821 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 19454 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 13298 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 22532 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 28688 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 25610 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 55909 0.66 0.881235
Target:  5'- cUCCACGgCCAuggCCUUgaUGUCCGCGg -3'
miRNA:   3'- aAGGUGCgGGUucaGGAG--GUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 157774 0.66 0.881235
Target:  5'- cUCCucguGgGCCCGGGagCCcCCGUCCACa -3'
miRNA:   3'- aAGG----UgCGGGUUCa-GGaGGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 87153 0.66 0.881235
Target:  5'- -cCCugGCCCuuguuauuGUUCUCC-UCCugGc -3'
miRNA:   3'- aaGGugCGGGuu------CAGGAGGuAGGugC- -5'
28779 5' -56.9 NC_006146.1 + 154977 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 151899 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 142666 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 145743 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 16376 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.