miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 3' -62.5 NC_006146.1 + 137697 0.66 0.63328
Target:  5'- -cGGCucccCCUCCGGccUCCCCccgGGGUGCCc- -3'
miRNA:   3'- guCCG----GGAGGUC--AGGGG---CCUACGGuu -5'
28780 3' -62.5 NC_006146.1 + 55531 0.66 0.63328
Target:  5'- cCAGGgCCUCCAGcUCCgCCGccacgccgGCCAGg -3'
miRNA:   3'- -GUCCgGGAGGUC-AGG-GGCcua-----CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 50065 0.66 0.624385
Target:  5'- gCAGGCCCUCCAGgaagcgcuugugcggCaCCUGGAucugacuccgguUGCgGAg -3'
miRNA:   3'- -GUCCGGGAGGUCa--------------G-GGGCCU------------ACGgUU- -5'
28780 3' -62.5 NC_006146.1 + 46045 0.66 0.623396
Target:  5'- gGGGCCCUCCAGgggacgCagCGaGUGCCAu -3'
miRNA:   3'- gUCCGGGAGGUCa-----GggGCcUACGGUu -5'
28780 3' -62.5 NC_006146.1 + 107897 0.66 0.623396
Target:  5'- uCGGGCaCCcgCCAGaCuCCCGGAgcccaggGCCAGg -3'
miRNA:   3'- -GUCCG-GGa-GGUCaG-GGGCCUa------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 48046 0.66 0.603654
Target:  5'- uCGGGUCgUCCAGcgCCCCGGGcagcgUGCgGu -3'
miRNA:   3'- -GUCCGGgAGGUCa-GGGGCCU-----ACGgUu -5'
28780 3' -62.5 NC_006146.1 + 1154 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 3018 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 2086 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 57455 0.66 0.592825
Target:  5'- cCGGGCCgcggcucacguuuUUCCAGUCguCCCGcgggcGAUGCCAGa -3'
miRNA:   3'- -GUCCGG-------------GAGGUCAG--GGGC-----CUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 84978 0.66 0.583989
Target:  5'- gCAGGCCaUCCAGgCCCCaGGGUaaaGCCc- -3'
miRNA:   3'- -GUCCGGgAGGUCaGGGG-CCUA---CGGuu -5'
28780 3' -62.5 NC_006146.1 + 130025 0.66 0.583989
Target:  5'- gAGGCCCcggcUCC-GUCUCCGGAccgcgaGCCGGg -3'
miRNA:   3'- gUCCGGG----AGGuCAGGGGCCUa-----CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 52619 0.67 0.574203
Target:  5'- uGGGCCauCUCguGcCCCCugaGGAUGCCGc -3'
miRNA:   3'- gUCCGG--GAGguCaGGGG---CCUACGGUu -5'
28780 3' -62.5 NC_006146.1 + 24114 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 14881 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 27192 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 153947 0.67 0.574203
Target:  5'- aAGGCCCgCCGcUCCCCGuugggcacGGUGCCu- -3'
miRNA:   3'- gUCCGGGaGGUcAGGGGC--------CUACGGuu -5'
28780 3' -62.5 NC_006146.1 + 131945 0.67 0.574203
Target:  5'- gGGGCCCa------CCCGGAUGCCAAg -3'
miRNA:   3'- gUCCGGGaggucagGGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 52436 0.67 0.574203
Target:  5'- --uGCCCUCCAGUuuggggucgacgCCCUGGAgagggGCCu- -3'
miRNA:   3'- gucCGGGAGGUCA------------GGGGCCUa----CGGuu -5'
28780 3' -62.5 NC_006146.1 + 21036 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.