miRNA display CGI


Results 1 - 20 of 321 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 5' -54.1 NC_006146.1 + 170505 0.67 0.940621
Target:  5'- cCCGgaCCCCCAGCGcgcggcgggcGGGGCcUGAGGgGGc -3'
miRNA:   3'- -GGC--GGGGGUUGUu---------UCUCG-ACUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 170470 0.67 0.945157
Target:  5'- gUGUCCCgCGACccGAGGGGC--GAGCGGg -3'
miRNA:   3'- gGCGGGG-GUUG--UUUCUCGacUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 170162 0.7 0.836567
Target:  5'- gCGgCgCCGGCcGGGGGCUGAGGgGGc -3'
miRNA:   3'- gGCgGgGGUUGuUUCUCGACUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 169681 0.71 0.811123
Target:  5'- gCUGCCaCCGGCcAAGAGCgcaGAGGCGa -3'
miRNA:   3'- -GGCGGgGGUUGuUUCUCGa--CUUCGCc -5'
28782 5' -54.1 NC_006146.1 + 169637 0.7 0.843885
Target:  5'- uCUGCUCCCGuugGCGGGGAgaauacaGCUGGgcguGGCGGg -3'
miRNA:   3'- -GGCGGGGGU---UGUUUCU-------CGACU----UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 169539 0.67 0.945157
Target:  5'- gUGUCCCgCGACccGAGGGGC--GAGCGGg -3'
miRNA:   3'- gGCGGGG-GUUG--UUUCUCGacUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 169231 0.7 0.836567
Target:  5'- gCGgCgCCGGCcGGGGGCUGAGGgGGc -3'
miRNA:   3'- gGCgGgGGUUGuUUCUCGACUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 168704 0.7 0.852618
Target:  5'- uCUGCUCCCGuugGCGGGGAgaaugacaGCUGGgcguGGCGGg -3'
miRNA:   3'- -GGCGGGGGU---UGUUUCU--------CGACU----UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 168607 0.67 0.945157
Target:  5'- gUGUCCCgCGACccGAGGGGC--GAGCGGg -3'
miRNA:   3'- gGCGGGG-GUUG--UUUCUCGacUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 168328 0.66 0.970282
Target:  5'- aCGCCCuCCAAacguccagagccuCAGuGGGCUGAAGaaccaGGu -3'
miRNA:   3'- gGCGGG-GGUU-------------GUUuCUCGACUUCg----CC- -5'
28782 5' -54.1 NC_006146.1 + 168299 0.7 0.836567
Target:  5'- gCGgCgCCGGCcGGGGGCUGAGGgGGc -3'
miRNA:   3'- gGCgGgGGUUGuUUCUCGACUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 167856 0.66 0.960997
Target:  5'- gCGCUCUCGGCGuAGGGGCacgGAGguGCGGu -3'
miRNA:   3'- gGCGGGGGUUGU-UUCUCGa--CUU--CGCC- -5'
28782 5' -54.1 NC_006146.1 + 167772 0.7 0.852618
Target:  5'- uCUGCUCCCGuugGCGGGGAgaaugacaGCUGGgcguGGCGGg -3'
miRNA:   3'- -GGCGGGGGU---UGUUUCU--------CGACU----UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 167674 0.67 0.945157
Target:  5'- gUGUCCCgCGACccGAGGGGC--GAGCGGg -3'
miRNA:   3'- gGCGGGG-GUUG--UUUCUCGacUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 167367 0.7 0.836567
Target:  5'- gCGgCgCCGGCcGGGGGCUGAGGgGGc -3'
miRNA:   3'- gGCgGgGGUUGuUUCUCGACUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 162598 0.7 0.836567
Target:  5'- -gGCCCUaaCAGCAcaGAGAGCgaccccgGGAGUGGg -3'
miRNA:   3'- ggCGGGG--GUUGU--UUCUCGa------CUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 161438 0.67 0.953531
Target:  5'- -gGCCCCgCGGgaaccCAAGGcGCgUGggGCGGg -3'
miRNA:   3'- ggCGGGG-GUU-----GUUUCuCG-ACuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 160412 0.68 0.908434
Target:  5'- -aGCCUgCGAUAGAGGGCgagGuAGUGGg -3'
miRNA:   3'- ggCGGGgGUUGUUUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 159774 0.69 0.889166
Target:  5'- aCCGCCCCCAGguaggcCGAGGGGUcGAGcccauCGGg -3'
miRNA:   3'- -GGCGGGGGUU------GUUUCUCGaCUUc----GCC- -5'
28782 5' -54.1 NC_006146.1 + 159418 0.72 0.774045
Target:  5'- aCgGCCCCCGAgucCGGGuGGCUGAuggucgaGGCGGg -3'
miRNA:   3'- -GgCGGGGGUU---GUUUcUCGACU-------UCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.