miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 170391 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 169561 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 169460 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 168629 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 168528 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167696 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167596 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 159400 0.67 0.671095
Target:  5'- gCGCUGUccacgaucaugacGGCCCCCgaGUCCGGGUggcugauggUCGa -3'
miRNA:   3'- -GCGGUA-------------UCGGGGGgaCGGGCUCA---------AGC- -5'
28783 3' -60.4 NC_006146.1 + 159034 0.66 0.729991
Target:  5'- uGCCAgucaacgucgGGCCCgCCCcaaGCCCGAGa--- -3'
miRNA:   3'- gCGGUa---------UCGGG-GGGa--CGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 156142 0.78 0.186455
Target:  5'- uGCCcgAGCCCCgCCUGCCUGAccucGUUCu -3'
miRNA:   3'- gCGGuaUCGGGG-GGACGGGCU----CAAGc -5'
28783 3' -60.4 NC_006146.1 + 144377 0.69 0.573882
Target:  5'- aCGCUGUGGCUgUCUUGCCUGGGUgugUGg -3'
miRNA:   3'- -GCGGUAUCGGgGGGACGGGCUCAa--GC- -5'
28783 3' -60.4 NC_006146.1 + 140766 0.69 0.583634
Target:  5'- gGCCAUGcccaCCCCCCUGCauGGGggCGc -3'
miRNA:   3'- gCGGUAUc---GGGGGGACGggCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 137973 0.66 0.739417
Target:  5'- gGCCG-GGCCUCCCggggGCCCGgcGGggUGg -3'
miRNA:   3'- gCGGUaUCGGGGGGa---CGGGC--UCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 137608 0.69 0.603228
Target:  5'- gGCCGgguGCCCCUggGUCCGcuGGUUCGg -3'
miRNA:   3'- gCGGUau-CGGGGGgaCGGGC--UCAAGC- -5'
28783 3' -60.4 NC_006146.1 + 131870 0.68 0.613059
Target:  5'- uGCCugcUGGCCCCCaUGUuuGGGUUgCGa -3'
miRNA:   3'- gCGGu--AUCGGGGGgACGggCUCAA-GC- -5'
28783 3' -60.4 NC_006146.1 + 130419 0.67 0.701275
Target:  5'- uGCCuuucgcGGCCCCUCUGCCCcccUUCa -3'
miRNA:   3'- gCGGua----UCGGGGGGACGGGcucAAGc -5'
28783 3' -60.4 NC_006146.1 + 130164 0.68 0.640632
Target:  5'- gGCCAgccccaagcacgGGCCCgCCUGCCCGGa---- -3'
miRNA:   3'- gCGGUa-----------UCGGGgGGACGGGCUcaagc -5'
28783 3' -60.4 NC_006146.1 + 129052 0.68 0.632752
Target:  5'- gGCCccgGUAGCCCCuggCCacgGCCCGGGUg-- -3'
miRNA:   3'- gCGG---UAUCGGGG---GGa--CGGGCUCAagc -5'
28783 3' -60.4 NC_006146.1 + 127541 0.66 0.729991
Target:  5'- cCGCUA-AGCcaCCCCCUGCCaCGGGcugCGc -3'
miRNA:   3'- -GCGGUaUCG--GGGGGACGG-GCUCaa-GC- -5'
28783 3' -60.4 NC_006146.1 + 124729 0.67 0.701275
Target:  5'- gGCCGcucucUGGCCCCa---CCCGAGUUCc -3'
miRNA:   3'- gCGGU-----AUCGGGGggacGGGCUCAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.