miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 151150 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 150524 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 149538 0.69 0.84501
Target:  5'- uGUCgau-GACCgGCAGGaaGCCCGCCg -3'
miRNA:   3'- cCAGaccuUUGGaCGUCCa-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 148894 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 148072 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 147446 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 145816 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 144994 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 144368 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 142738 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 141916 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 141290 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 141052 0.67 0.908445
Target:  5'- cGUCUuGucAAACgUGCGGGUGCCCugGCUc -3'
miRNA:   3'- cCAGAcC--UUUGgACGUCCACGGG--UGG- -5'
28786 3' -55.5 NC_006146.1 + 139657 0.73 0.586927
Target:  5'- ----aGGAGGCCUGCAuGGaGCCCACg -3'
miRNA:   3'- ccagaCCUUUGGACGU-CCaCGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 138253 0.73 0.617317
Target:  5'- cGUUgGGuuACCUGCAGGUGUguCCACa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG--GGUGg -5'
28786 3' -55.5 NC_006146.1 + 137739 0.68 0.86059
Target:  5'- cGGuUCUGGAGcuCCUGgGGGUccgcucGUCCGCUg -3'
miRNA:   3'- -CC-AGACCUUu-GGACgUCCA------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 137586 0.7 0.76634
Target:  5'- cGGUcCUGGAGcucggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU-----UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 137493 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 137400 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 137307 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.