miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 127490 0.66 0.926291
Target:  5'- aCGAGGAGa-CGGCGGGgGuCGcagccGGGGCa -3'
miRNA:   3'- -GCUCCUCgaGUUGCUCgC-GCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 48942 0.66 0.926291
Target:  5'- uCGGGGAccaGcCUCAGgGAGuUGUG-GGAGCg -3'
miRNA:   3'- -GCUCCU---C-GAGUUgCUC-GCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 123358 0.66 0.926291
Target:  5'- cCGAgGGAGCUCuGGCGcuGGC-CG-GGGGCc -3'
miRNA:   3'- -GCU-CCUCGAG-UUGC--UCGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 122174 0.66 0.925764
Target:  5'- aGaAGGAGCUgCugcGCGAGCgggaggccagagaGCGgacGGAGCg -3'
miRNA:   3'- gC-UCCUCGA-Gu--UGCUCG-------------CGCa--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 128199 0.66 0.925764
Target:  5'- aGGGGGGCgccgCGgcgccgggccagACGcucuuucGGCGCGgGGAGCu -3'
miRNA:   3'- gCUCCUCGa---GU------------UGC-------UCGCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 154601 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 151523 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 148445 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 145367 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 142289 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 57972 0.66 0.923092
Target:  5'- aCGAGGAGUUCuuccaggcgcaccagGACGAGC---UGGAGg -3'
miRNA:   3'- -GCUCCUCGAG---------------UUGCUCGcgcACCUCg -5'
28792 5' -56.5 NC_006146.1 + 43626 0.66 0.920913
Target:  5'- aGAgGGAGUgggCGGCGGG-GCGUGGccGCc -3'
miRNA:   3'- gCU-CCUCGa--GUUGCUCgCGCACCu-CG- -5'
28792 5' -56.5 NC_006146.1 + 53331 0.66 0.920913
Target:  5'- cCGAGGAgGCcCGGCG-GC-CGcGGGGCg -3'
miRNA:   3'- -GCUCCU-CGaGUUGCuCGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 130722 0.66 0.920913
Target:  5'- cCGAGGAGgaCGAgGAG-GCG-GcGGGCu -3'
miRNA:   3'- -GCUCCUCgaGUUgCUCgCGCaC-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 51185 0.66 0.920913
Target:  5'- -aAGGGGgUCuGCGGGCugGCGUGGuacagGGCa -3'
miRNA:   3'- gcUCCUCgAGuUGCUCG--CGCACC-----UCG- -5'
28792 5' -56.5 NC_006146.1 + 101064 0.66 0.915303
Target:  5'- cCGAGG-GC-C-ACGGGCucauGCuGUGGGGCa -3'
miRNA:   3'- -GCUCCuCGaGuUGCUCG----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 161430 0.66 0.915303
Target:  5'- gCGGGuGuGGCcCcGCGggaacccaaGGCGCGUGGGGCg -3'
miRNA:   3'- -GCUC-C-UCGaGuUGC---------UCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169650 0.66 0.915303
Target:  5'- gCGGGGAGaauaCAGCuGGGCGUGgcgGGcGCg -3'
miRNA:   3'- -GCUCCUCga--GUUG-CUCGCGCa--CCuCG- -5'
28792 5' -56.5 NC_006146.1 + 61586 0.66 0.914729
Target:  5'- uGAGGAagagccgGCUgCAGCGGcCGCGgccGGGGCc -3'
miRNA:   3'- gCUCCU-------CGA-GUUGCUcGCGCa--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 13945 0.66 0.913575
Target:  5'- gGGGGAGCccaggacaacuuuaUCAGCGAGC----GGAGCc -3'
miRNA:   3'- gCUCCUCG--------------AGUUGCUCGcgcaCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.