Results 1 - 20 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 44775 | 0.67 | 0.711487 |
Target: 5'- gAGGGUGCCgugccGGGCUCagGGGGGCgCa -3' miRNA: 3'- -UCUCGCGGau---CCCGAGg-UUCUCGgGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 44555 | 0.66 | 0.730768 |
Target: 5'- aAGGG-GCC-GGGGCUCCGGGuGGCUg- -3' miRNA: 3'- -UCUCgCGGaUCCCGAGGUUC-UCGGgg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 42371 | 0.66 | 0.730768 |
Target: 5'- --cGCGCCgccAGGGUgggCgAGGGGCgCCCc -3' miRNA: 3'- ucuCGCGGa--UCCCGa--GgUUCUCG-GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 102990 | 0.66 | 0.730768 |
Target: 5'- uGAGCaCCUucGGCUCCcacGAGgCCCa -3' miRNA: 3'- uCUCGcGGAucCCGAGGuu-CUCgGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 162579 | 0.66 | 0.721163 |
Target: 5'- --uGCGCCacggAGGGU--CGGGGGCCCUa -3' miRNA: 3'- ucuCGCGGa---UCCCGagGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 107547 | 0.66 | 0.721163 |
Target: 5'- --cGUGCCcAGGGgUCCcAGGGCUUCg -3' miRNA: 3'- ucuCGCGGaUCCCgAGGuUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 66359 | 0.66 | 0.721163 |
Target: 5'- cGAGCcCCUggugcAGGGCuUUCAAG-GCCUCa -3' miRNA: 3'- uCUCGcGGA-----UCCCG-AGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 126478 | 0.67 | 0.711487 |
Target: 5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3' miRNA: 3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 123327 | 0.67 | 0.711487 |
Target: 5'- cGGGaCGUCUgcGGGGCcgUCAGGGGUCUCg -3' miRNA: 3'- uCUC-GCGGA--UCCCGa-GGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 102394 | 0.66 | 0.734587 |
Target: 5'- gGGAGCuggugguaucugucCCUGGGGCggCCAaAGAGCCa- -3' miRNA: 3'- -UCUCGc-------------GGAUCCCGa-GGU-UCUCGGgg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 58235 | 0.66 | 0.740291 |
Target: 5'- gGGGGCGUggaCaAGGGCUauaaaAGGGGCCCg -3' miRNA: 3'- -UCUCGCG---GaUCCCGAgg---UUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 73154 | 0.66 | 0.740291 |
Target: 5'- uGGAGUGCagUAGGGU---GAGGcGCCCCa -3' miRNA: 3'- -UCUCGCGg-AUCCCGaggUUCU-CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 30278 | 0.66 | 0.762766 |
Target: 5'- aGGAGCGCCgugguccccuccuGGGCUUCGcuGGuGCUgCCa -3' miRNA: 3'- -UCUCGCGGau-----------CCCGAGGU--UCuCGG-GG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 90975 | 0.66 | 0.759061 |
Target: 5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3' miRNA: 3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 9791 | 0.66 | 0.759061 |
Target: 5'- uGAGCGUCU---GCUCCucuccAGGGCCCa -3' miRNA: 3'- uCUCGCGGAuccCGAGGu----UCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 76952 | 0.66 | 0.759061 |
Target: 5'- uGGAGguCGCCUGGGaCggagagcGGAGCCCCg -3' miRNA: 3'- -UCUC--GCGGAUCCcGaggu---UCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 124749 | 0.66 | 0.749725 |
Target: 5'- cGAGUuCCUGGGGCuggUCCAcaaucAGAGCacggccagggCCCg -3' miRNA: 3'- uCUCGcGGAUCCCG---AGGU-----UCUCG----------GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 111365 | 0.66 | 0.749725 |
Target: 5'- cAGGGCGacaaaCUGGGaaUUgAAGAGCCCg -3' miRNA: 3'- -UCUCGCg----GAUCCcgAGgUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 118636 | 0.66 | 0.740291 |
Target: 5'- gGGGGCGCCcGGGGC-CCAGuacacGuGCgUCCa -3' miRNA: 3'- -UCUCGCGGaUCCCGaGGUU-----CuCG-GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 62383 | 0.66 | 0.740291 |
Target: 5'- cGGGGCcucgGCCUGGGGUaagguuaucgacUCCG-GAaCCCCg -3' miRNA: 3'- -UCUCG----CGGAUCCCG------------AGGUuCUcGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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