miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 151374 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 151310 0.68 0.925337
Target:  5'- gUAGGAGggCCAGGAGCUguccucgcgccggaCCGAGAGg- -3'
miRNA:   3'- -GUUCUCgaGGUUCUCGA--------------GGUUCUCga -5'
28803 5' -53 NC_006146.1 + 150684 0.66 0.966257
Target:  5'- gGGGAGUggCCAGGGGgaCgGAGGGCc -3'
miRNA:   3'- gUUCUCGa-GGUUCUCgaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 149448 0.66 0.96286
Target:  5'- cCGAGAGCUUgcGGcucAGCUCCGuggagaagcAGAGCUc -3'
miRNA:   3'- -GUUCUCGAGguUC---UCGAGGU---------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 149322 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 149196 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 148296 0.8 0.325238
Target:  5'- aCAGGAGCUCCAgcaGGAGCgCgGAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---UCUCGaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 148296 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 146244 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 146118 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 145218 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 143166 0.67 0.955367
Target:  5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3'
miRNA:   3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 143040 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 142140 0.67 0.937458
Target:  5'- cUAGGGGC-CCu-GGGCcCCGAGGGCg -3'
miRNA:   3'- -GUUCUCGaGGuuCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 137893 0.71 0.796607
Target:  5'- gCAGGGGgUCCccguggacagggccGGGGGUUCCGGGGGCa -3'
miRNA:   3'- -GUUCUCgAGG--------------UUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 136739 0.66 0.972382
Target:  5'- uGGGGGCgcaccccCCAcccucgccGGGGCUCCGGGAGg- -3'
miRNA:   3'- gUUCUCGa------GGU--------UCUCGAGGUUCUCga -5'
28803 5' -53 NC_006146.1 + 133067 0.71 0.790999
Target:  5'- cCAGGguGGUUCCGGGuggggggguggucccGCUCCGAGAGCUu -3'
miRNA:   3'- -GUUC--UCGAGGUUCu--------------CGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 131123 0.67 0.955367
Target:  5'- cCGGGAGCUCCGGGcccaAGCcugacUCCAAGccccAGCc -3'
miRNA:   3'- -GUUCUCGAGGUUC----UCG-----AGGUUC----UCGa -5'
28803 5' -53 NC_006146.1 + 124749 0.66 0.966257
Target:  5'- --cGAGUUCCuGGGGCuggUCCAcaaucAGAGCa -3'
miRNA:   3'- guuCUCGAGGuUCUCG---AGGU-----UCUCGa -5'
28803 5' -53 NC_006146.1 + 123440 0.75 0.563923
Target:  5'- gAAGAgGCUCCuGGAGCUC-GAGAGCa -3'
miRNA:   3'- gUUCU-CGAGGuUCUCGAGgUUCUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.