miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 128450 0.65 0.824317
Target:  5'- cCACCagcuguugaccccgGGGACGG-GACCCCgGGAGg-- -3'
miRNA:   3'- aGUGG--------------UCCUGCUgCUGGGG-CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 12896 0.65 0.824317
Target:  5'- cCACCagcuguugaccccgGGGACGG-GACCCCgGGAGg-- -3'
miRNA:   3'- aGUGG--------------UCCUGCUgCUGGGG-CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 94848 0.66 0.821807
Target:  5'- cCACCGGGACGuacccccggucgggcACGA-CCCGGuaacuGGUCc -3'
miRNA:   3'- aGUGGUCCUGC---------------UGCUgGGGCC-----UCAGu -5'
2881 3' -58.5 NC_001493.1 + 62402 0.66 0.818437
Target:  5'- -aACCcucGGCGaACGAUCCCGGAGcCGa -3'
miRNA:   3'- agUGGuc-CUGC-UGCUGGGGCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 53398 0.66 0.818437
Target:  5'- aUCACCGcGGugG-CGAUCCCgaccaucgcacGGAGUUc -3'
miRNA:   3'- -AGUGGU-CCugCuGCUGGGG-----------CCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 94346 0.66 0.818437
Target:  5'- aUCGCguGGuACGAccucaCGGCCCCGG-GUa- -3'
miRNA:   3'- -AGUGguCC-UGCU-----GCUGGGGCCuCAgu -5'
2881 3' -58.5 NC_001493.1 + 58840 0.66 0.818437
Target:  5'- gUCACCgcGGGACGGa-ACCCCuucGGuGUCGu -3'
miRNA:   3'- -AGUGG--UCCUGCUgcUGGGG---CCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 41515 0.66 0.809899
Target:  5'- gCGCCGuucuuuguaGCGGCGGCCCUGGAGg-- -3'
miRNA:   3'- aGUGGUcc-------UGCUGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 62769 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62727 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 62685 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 87966 0.66 0.801206
Target:  5'- gCGCCuGGAgCGAuCGAUcgagaCUCGGAGUCGa -3'
miRNA:   3'- aGUGGuCCU-GCU-GCUG-----GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 26136 0.66 0.801206
Target:  5'- aUCACUGGGACGGCGcggugccgagaACCaCCGGuGa-- -3'
miRNA:   3'- -AGUGGUCCUGCUGC-----------UGG-GGCCuCagu -5'
2881 3' -58.5 NC_001493.1 + 62811 0.66 0.801206
Target:  5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3'
miRNA:   3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 8478 0.66 0.792365
Target:  5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3'
miRNA:   3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 124032 0.66 0.792365
Target:  5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3'
miRNA:   3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 118386 0.66 0.792365
Target:  5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3'
miRNA:   3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 2832 0.66 0.792365
Target:  5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3'
miRNA:   3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 113878 0.66 0.783386
Target:  5'- uUCAUCGGGcgguaGugGACCCCGaGcGUCu -3'
miRNA:   3'- -AGUGGUCCug---CugCUGGGGC-CuCAGu -5'
2881 3' -58.5 NC_001493.1 + 100294 0.66 0.783386
Target:  5'- gUUAUUucuGGAUuggagcacgGGCGGCCCCGGGGUUg -3'
miRNA:   3'- -AGUGGu--CCUG---------CUGCUGGGGCCUCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.