Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2881 | 3' | -58.5 | NC_001493.1 | + | 13065 | 0.68 | 0.667892 |
Target: 5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3' miRNA: 3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62895 | 0.68 | 0.667892 |
Target: 5'- cCACCAcGACGGCGaaGCCCaCGGGGgCGa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGG-GCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 128619 | 0.68 | 0.667892 |
Target: 5'- cUC-CCGGGGuccCGuCCCCGGGGUCAa -3' miRNA: 3'- -AGuGGUCCUgcuGCuGGGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 63729 | 0.69 | 0.617733 |
Target: 5'- aUCACCAcGGCGACG-CCCacgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGGGg--CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 8478 | 0.66 | 0.792365 |
Target: 5'- uUCGaagCGGGcACGGCGcGCCaCGGAGUCAc -3' miRNA: 3'- -AGUg--GUCC-UGCUGC-UGGgGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 70679 | 0.67 | 0.755695 |
Target: 5'- -gGCCcGGGCGGgGAUCCCGGcGGaUCAc -3' miRNA: 3'- agUGGuCCUGCUgCUGGGGCC-UC-AGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 63975 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 3019 | 0.7 | 0.59669 |
Target: 5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3' miRNA: 3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62853 | 0.67 | 0.736696 |
Target: 5'- cCACCAcGACGGCGaaGCCCacgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGGg--CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118573 | 0.7 | 0.59669 |
Target: 5'- cCGCCguggucgaacagaAGGGCG-CGAUcgaCCCGGGGUCAu -3' miRNA: 3'- aGUGG-------------UCCUGCuGCUG---GGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 63606 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 112455 | 0.68 | 0.667892 |
Target: 5'- uUC-CCGGGAauuCGACCCCGGGuuucgaaucccGUCAg -3' miRNA: 3'- -AGuGGUCCUgcuGCUGGGGCCU-----------CAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 64017 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 64059 | 0.68 | 0.667892 |
Target: 5'- aUCACCAcGGCGACGcCCgCgGGAGcCAa -3' miRNA: 3'- -AGUGGUcCUGCUGCuGG-GgCCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 90620 | 0.69 | 0.637818 |
Target: 5'- cCACCAuGGACGGUG-CgCUCGGGGUCAu -3' miRNA: 3'- aGUGGU-CCUGCUGCuG-GGGCCUCAGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 124710 | 0.69 | 0.627774 |
Target: 5'- aCACCagguucugaaacGGGACGGCGuACCCCGuGGGaUCc -3' miRNA: 3'- aGUGG------------UCCUGCUGC-UGGGGC-CUC-AGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62685 | 0.66 | 0.801206 |
Target: 5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 62811 | 0.66 | 0.801206 |
Target: 5'- cCACCAcGACGGCGaaGCCCgCgGGAGcCAa -3' miRNA: 3'- aGUGGUcCUGCUGC--UGGG-G-CCUCaGU- -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 113878 | 0.66 | 0.783386 |
Target: 5'- uUCAUCGGGcgguaGugGACCCCGaGcGUCu -3' miRNA: 3'- -AGUGGUCCug---CugCUGGGGC-CuCAGu -5' |
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2881 | 3' | -58.5 | NC_001493.1 | + | 118801 | 0.67 | 0.765042 |
Target: 5'- gCACCGGccgUGACGAgCCCgagguGGAGUCAg -3' miRNA: 3'- aGUGGUCcu-GCUGCUgGGG-----CCUCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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