miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 3' -66.5 NC_006146.1 + 35209 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 134670 0.66 0.502498
Target:  5'- aGCCGcccuGCCUCcuccCCGGCCGgCuuGCGCUCc -3'
miRNA:   3'- -UGGC----CGGAGc---GGCCGGUgGu-CGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 34280 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34373 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34466 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34559 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34652 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34745 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 34838 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35023 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35116 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 137597 0.66 0.502498
Target:  5'- aGCCccaGGaCCgagCGgCGGCgCAgCGGUGCCCa -3'
miRNA:   3'- -UGG---CC-GGa--GCgGCCG-GUgGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 35302 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35395 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35488 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35581 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35674 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 35767 0.66 0.502498
Target:  5'- cCCGGCagcggC-CCGGCCACCcccCGCCg -3'
miRNA:   3'- uGGCCGga---GcGGCCGGUGGuc-GCGGg -5'
28810 3' -66.5 NC_006146.1 + 117880 0.66 0.502498
Target:  5'- -gCGGCCgcgGCCaGCCGCguGagGCCCa -3'
miRNA:   3'- ugGCCGGag-CGGcCGGUGguCg-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 140687 0.66 0.502498
Target:  5'- uCCGGCCa-GcCCGGCgGgCgCAGCgGCCCu -3'
miRNA:   3'- uGGCCGGagC-GGCCGgU-G-GUCG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.