Results 41 - 60 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 3' | -57.4 | NC_006146.1 | + | 141253 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 73025 | 0.66 | 0.870964 |
Target: 5'- aCAGG-CUCAGGC-CCUCguUCCacggCCCg -3' miRNA: 3'- -GUCCgGAGUUUGaGGAGguAGGg---GGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 153565 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 156643 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 144331 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 147409 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 150487 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 14370 | 0.66 | 0.870964 |
Target: 5'- uCGGGUCcCGGGaucucgCCUCCcgCUCCCCu -3' miRNA: 3'- -GUCCGGaGUUUga----GGAGGuaGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 75887 | 0.66 | 0.863632 |
Target: 5'- gCGGGCUcccguaauUCcAGCaCCUCCucagcugCCCCCCa -3' miRNA: 3'- -GUCCGG--------AGuUUGaGGAGGua-----GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 119494 | 0.66 | 0.863632 |
Target: 5'- --cGCaCUCcAACUCCUCag-CCCCCUc -3' miRNA: 3'- gucCG-GAGuUUGAGGAGguaGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 4230 | 0.66 | 0.863632 |
Target: 5'- -cGGCCUCGGcACgcggggaaUUCUCCG-CUCCCCu -3' miRNA: 3'- guCCGGAGUU-UG--------AGGAGGUaGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 160963 | 0.66 | 0.863632 |
Target: 5'- cCAGGCuuuucgCUCAGcuGCUCCugcucgcgggcUCCGUCgCCUCCu -3' miRNA: 3'- -GUCCG------GAGUU--UGAGG-----------AGGUAG-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 125906 | 0.66 | 0.859136 |
Target: 5'- gGGGCCUCAccgagcuggagagaaGGgUCCggCCAccgcggucgagUCCCCCg -3' miRNA: 3'- gUCCGGAGU---------------UUgAGGa-GGU-----------AGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 25846 | 0.66 | 0.856098 |
Target: 5'- aGGGaCC-CGAGCagCC-CCGUCCCCgCCc -3' miRNA: 3'- gUCC-GGaGUUUGa-GGaGGUAGGGG-GG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 125121 | 0.66 | 0.856098 |
Target: 5'- -cGGCCgUCcccuGACUCuCUUCGUCUCCUCc -3' miRNA: 3'- guCCGG-AGu---UUGAG-GAGGUAGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 59072 | 0.66 | 0.856098 |
Target: 5'- aGGGCgaCGAGCUCUUgCugggCCUCCCu -3' miRNA: 3'- gUCCGgaGUUUGAGGAgGua--GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 168988 | 0.66 | 0.856098 |
Target: 5'- gUAGaGCCUUu-GCUCCUgUAcguUCCCCUCa -3' miRNA: 3'- -GUC-CGGAGuuUGAGGAgGU---AGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 88827 | 0.66 | 0.856098 |
Target: 5'- uGGGCCUgAGGCUcCCUgUAUCCCa-- -3' miRNA: 3'- gUCCGGAgUUUGA-GGAgGUAGGGggg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 74434 | 0.66 | 0.856098 |
Target: 5'- uGGGCCagGAugUCCuuguacaugUCCcUgCCCCCa -3' miRNA: 3'- gUCCGGagUUugAGG---------AGGuAgGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 22768 | 0.66 | 0.856098 |
Target: 5'- aGGGaCC-CGAGCagCC-CCGUCCCCgCCc -3' miRNA: 3'- gUCC-GGaGUUUGa-GGaGGUAGGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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