Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 5' | -60 | NC_006146.1 | + | 2137 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 43597 | 0.67 | 0.681411 |
Target: 5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3' miRNA: 3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 142361 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 145439 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 148517 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 151595 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 157750 | 0.67 | 0.729927 |
Target: 5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3' miRNA: 3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 88851 | 0.66 | 0.739425 |
Target: 5'- -aGGUAGGGaAUCGGcGGGgCCuGGGGCu -3' miRNA: 3'- uaCCAUCCC-UGGCC-CUCaGGcUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 124523 | 0.66 | 0.739425 |
Target: 5'- cUGGcgAGGGA-CGGGGGcCUGGGGGa -3' miRNA: 3'- uACCa-UCCCUgGCCCUCaGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 51582 | 0.66 | 0.748835 |
Target: 5'- -cGGgAGGGGcCCGGGGGagCCaGAGGGg -3' miRNA: 3'- uaCCaUCCCU-GGCCCUCa-GG-CUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 142424 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 145502 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 148580 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 151658 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 154735 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 157813 | 0.66 | 0.758148 |
Target: 5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3' miRNA: 3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 105189 | 0.66 | 0.758148 |
Target: 5'- aGUGaccGGGGCCgGGGAG-CCGGGGGu -3' miRNA: 3'- -UACcauCCCUGG-CCCUCaGGCUCCUg -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 274 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 1205 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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28823 | 5' | -60 | NC_006146.1 | + | 3069 | 0.66 | 0.767357 |
Target: 5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3' miRNA: 3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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