miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 5' -60 NC_006146.1 + 13935 0.67 0.681411
Target:  5'- -gGGU-GGGcCCGGGGGagCCcAGGACa -3'
miRNA:   3'- uaCCAuCCCuGGCCCUCa-GGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 124523 0.66 0.739425
Target:  5'- cUGGcgAGGGA-CGGGGGcCUGGGGGa -3'
miRNA:   3'- uACCa-UCCCUgGCCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 88851 0.66 0.739425
Target:  5'- -aGGUAGGGaAUCGGcGGGgCCuGGGGCu -3'
miRNA:   3'- uaCCAUCCC-UGGCC-CUCaGGcUCCUG- -5'
28823 5' -60 NC_006146.1 + 157750 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 151595 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 148517 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 145439 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 142361 0.67 0.729927
Target:  5'- -gGGUcuuGGGcCUGGGAgGUCCGGGGu- -3'
miRNA:   3'- uaCCAu--CCCuGGCCCU-CAGGCUCCug -5'
28823 5' -60 NC_006146.1 + 43597 0.67 0.681411
Target:  5'- -gGGgcGGGagGCCGGGucgGGUCgGGGGAa -3'
miRNA:   3'- uaCCauCCC--UGGCCC---UCAGgCUCCUg -5'
28823 5' -60 NC_006146.1 + 51582 0.66 0.748835
Target:  5'- -cGGgAGGGGcCCGGGGGagCCaGAGGGg -3'
miRNA:   3'- uaCCaUCCCU-GGCCCUCa-GG-CUCCUg -5'
28823 5' -60 NC_006146.1 + 142424 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 145502 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 2137 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 1205 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 274 0.66 0.767357
Target:  5'- cGUGagGGGGAgcCCGGGAagacCCGGGGGCg -3'
miRNA:   3'- -UACcaUCCCU--GGCCCUca--GGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 105189 0.66 0.758148
Target:  5'- aGUGaccGGGGCCgGGGAG-CCGGGGGu -3'
miRNA:   3'- -UACcauCCCUGG-CCCUCaGGCUCCUg -5'
28823 5' -60 NC_006146.1 + 157813 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 154735 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 151658 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5'
28823 5' -60 NC_006146.1 + 148580 0.66 0.758148
Target:  5'- cUGGcgacccUGGGGucuguCUGGGGGaCUGAGGGCg -3'
miRNA:   3'- uACC------AUCCCu----GGCCCUCaGGCUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.