miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 3' -53.5 NC_006146.1 + 42082 0.66 0.979012
Target:  5'- uGCUCCUGGac--CGCGCcguCCUUcGCGg -3'
miRNA:   3'- -CGAGGACCcuauGUGCGu--GGAGuUGC- -5'
28827 3' -53.5 NC_006146.1 + 140537 0.66 0.979012
Target:  5'- aGC-CCUGGGAgggACG-GCACCcCAAUu -3'
miRNA:   3'- -CGaGGACCCUa--UGUgCGUGGaGUUGc -5'
28827 3' -53.5 NC_006146.1 + 121147 0.66 0.976651
Target:  5'- gGCgucugggCCUGGGccGCGCGCcCCUgaAACGa -3'
miRNA:   3'- -CGa------GGACCCuaUGUGCGuGGAg-UUGC- -5'
28827 3' -53.5 NC_006146.1 + 89706 0.66 0.976651
Target:  5'- --gCCUGGGAUACACGgguccggGCCUUGAa- -3'
miRNA:   3'- cgaGGACCCUAUGUGCg------UGGAGUUgc -5'
28827 3' -53.5 NC_006146.1 + 149825 0.66 0.976651
Target:  5'- gGCUCCggguggugUGGGcgGC-CaGgGCCUCGGCGa -3'
miRNA:   3'- -CGAGG--------ACCCuaUGuG-CgUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 91773 0.66 0.974102
Target:  5'- gGUgCCUGGGGUgccguGCugGCACC-CG-CGg -3'
miRNA:   3'- -CGaGGACCCUA-----UGugCGUGGaGUuGC- -5'
28827 3' -53.5 NC_006146.1 + 44883 0.66 0.968407
Target:  5'- aGCcCCUGGGcucGCGaugGUACCUUGACGg -3'
miRNA:   3'- -CGaGGACCCua-UGUg--CGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 161131 0.66 0.968407
Target:  5'- cGCUCaUUGGGc-GCAUGCACCagGAUGu -3'
miRNA:   3'- -CGAG-GACCCuaUGUGCGUGGagUUGC- -5'
28827 3' -53.5 NC_006146.1 + 156724 0.66 0.968407
Target:  5'- gGCUCCgGGGGUccagcCugGCGCagacgCUCAGCu -3'
miRNA:   3'- -CGAGGaCCCUAu----GugCGUG-----GAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 56568 0.66 0.968407
Target:  5'- aCUCCagggUGGuGAUGCAgGCGCCUgGggauGCGg -3'
miRNA:   3'- cGAGG----ACC-CUAUGUgCGUGGAgU----UGC- -5'
28827 3' -53.5 NC_006146.1 + 146034 0.67 0.965248
Target:  5'- aGCUCCUGGcacUGCGCGUccaGCUgCAGCa -3'
miRNA:   3'- -CGAGGACCcu-AUGUGCG---UGGaGUUGc -5'
28827 3' -53.5 NC_006146.1 + 113644 0.67 0.965248
Target:  5'- uGCUCCggGGGAUGgccuugcugacCACGgGCC-CGugGa -3'
miRNA:   3'- -CGAGGa-CCCUAU-----------GUGCgUGGaGUugC- -5'
28827 3' -53.5 NC_006146.1 + 106286 0.67 0.961874
Target:  5'- cCUCCUGGccUGCGCcaugaACCUCAGCa -3'
miRNA:   3'- cGAGGACCcuAUGUGcg---UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 39803 0.67 0.961524
Target:  5'- gGCUUCUGGGAcgGCGgcCGUugacggcccggcgGCCUCGGCc -3'
miRNA:   3'- -CGAGGACCCUa-UGU--GCG-------------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 44428 0.67 0.958279
Target:  5'- gGCUCCcGGGGU-CugGCACC-CGu-- -3'
miRNA:   3'- -CGAGGaCCCUAuGugCGUGGaGUugc -5'
28827 3' -53.5 NC_006146.1 + 45057 0.67 0.958279
Target:  5'- gGCUCCcuagGGGcgGCugAgGUGCCUCGugGg -3'
miRNA:   3'- -CGAGGa---CCCuaUG--UgCGUGGAGUugC- -5'
28827 3' -53.5 NC_006146.1 + 85817 0.67 0.958279
Target:  5'- -aUCaCUGGGGaGCugGUGCCUUGGCu -3'
miRNA:   3'- cgAG-GACCCUaUGugCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 162633 0.67 0.954458
Target:  5'- gGCUCCcagagagaacgGGGGUGCAUGCccCCUCGuagGCa -3'
miRNA:   3'- -CGAGGa----------CCCUAUGUGCGu-GGAGU---UGc -5'
28827 3' -53.5 NC_006146.1 + 158058 0.67 0.954458
Target:  5'- uGUUCCUGGGGcACAgcaucaGCACCUUgGACa -3'
miRNA:   3'- -CGAGGACCCUaUGUg-----CGUGGAG-UUGc -5'
28827 3' -53.5 NC_006146.1 + 39687 0.67 0.950408
Target:  5'- gGCUCCUGGGccUGCA-GCGCCgCucCGg -3'
miRNA:   3'- -CGAGGACCCu-AUGUgCGUGGaGuuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.