miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 42714 0.67 0.791141
Target:  5'- cCGC-GGCGCCCCccuggGCCGCC-----UCCc -3'
miRNA:   3'- -GCGuCCGUGGGG-----CGGCGGuaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 44440 0.67 0.745433
Target:  5'- uGCGcGCGCuuaCCUGCCGCCuUUCUcgCCg -3'
miRNA:   3'- gCGUcCGUG---GGGCGGCGGuAAGAa-GG- -5'
28832 3' -58.9 NC_006146.1 + 47207 0.66 0.808536
Target:  5'- gCGcCAGGCcCCUgGCCGCC--UCcgCCa -3'
miRNA:   3'- -GC-GUCCGuGGGgCGGCGGuaAGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 48105 0.67 0.791141
Target:  5'- aGCGcGGC-CUCgGCCGCCcgUCUcuUCUc -3'
miRNA:   3'- gCGU-CCGuGGGgCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 48249 0.75 0.348272
Target:  5'- gCGCggaGGGC-CCCCGCCGCCGUcCUggCg -3'
miRNA:   3'- -GCG---UCCGuGGGGCGGCGGUAaGAagG- -5'
28832 3' -58.9 NC_006146.1 + 48400 0.69 0.647052
Target:  5'- cCGC-GGCcuccauucucucgACCCCGCCGCCGUcc--CCg -3'
miRNA:   3'- -GCGuCCG-------------UGGGGCGGCGGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 48649 0.66 0.841456
Target:  5'- gGCGGGUGCCCaG-CGCC-UUCUgaaUCCu -3'
miRNA:   3'- gCGUCCGUGGGgCgGCGGuAAGA---AGG- -5'
28832 3' -58.9 NC_006146.1 + 48687 0.66 0.817011
Target:  5'- uCGCcGGCcucCCUCGcCCGCCGcUCcgUCCg -3'
miRNA:   3'- -GCGuCCGu--GGGGC-GGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 49657 0.73 0.421585
Target:  5'- aGCGGGCGCCCgGCUGCUuacacuugagcaUUCCg -3'
miRNA:   3'- gCGUCCGUGGGgCGGCGGuaag--------AAGG- -5'
28832 3' -58.9 NC_006146.1 + 51699 0.71 0.549324
Target:  5'- gGguGGCGgcuCCCgGCCGUCAUUCaUUCg -3'
miRNA:   3'- gCguCCGU---GGGgCGGCGGUAAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 52985 0.71 0.530027
Target:  5'- gCGCAGGCGgaCCUGCCGgCCGUgg--CCg -3'
miRNA:   3'- -GCGUCCGUg-GGGCGGC-GGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 53472 0.66 0.825328
Target:  5'- gCGCGGGUGCCUCGUCgGUCAggg--CCg -3'
miRNA:   3'- -GCGUCCGUGGGGCGG-CGGUaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 54609 0.7 0.568833
Target:  5'- cCGCGGGggcgcCAUCCgGCCGCCucUCUggUCCg -3'
miRNA:   3'- -GCGUCC-----GUGGGgCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 54953 0.71 0.539647
Target:  5'- cCGCgGGGCgACCgCCGCCGCCg--CUaCCg -3'
miRNA:   3'- -GCG-UCCG-UGG-GGCGGCGGuaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 55480 0.76 0.305148
Target:  5'- cCGCGGGCgagaacgagGCCCgGCCGCCAgcugCcUCCu -3'
miRNA:   3'- -GCGUCCG---------UGGGgCGGCGGUaa--GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 55529 0.67 0.745434
Target:  5'- gGCcaGGGCcuccaGCUCCGCCGCCAcgCcggCCa -3'
miRNA:   3'- gCG--UCCG-----UGGGGCGGCGGUaaGaa-GG- -5'
28832 3' -58.9 NC_006146.1 + 55689 0.68 0.735978
Target:  5'- aGCacGGGCACggCCGCCGCCGgggggcUCUgcccgCCg -3'
miRNA:   3'- gCG--UCCGUGg-GGCGGCGGUa-----AGAa----GG- -5'
28832 3' -58.9 NC_006146.1 + 55836 0.67 0.791141
Target:  5'- gGUGGGCACCCgGCCaCCAgcaacaCCg -3'
miRNA:   3'- gCGUCCGUGGGgCGGcGGUaagaa-GG- -5'
28832 3' -58.9 NC_006146.1 + 55938 0.66 0.808536
Target:  5'- cCGUGGGCugcugcguGCCCC-CCGCCAUcg--CCg -3'
miRNA:   3'- -GCGUCCG--------UGGGGcGGCGGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 56588 0.75 0.355869
Target:  5'- gGcCGGGCGCCgagcCCGCCGCCggUCU-CCu -3'
miRNA:   3'- gC-GUCCGUGG----GGCGGCGGuaAGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.