miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 108559 0.66 0.941891
Target:  5'- uUGGAGUGGcugggcuuggcUGGCGgcGGcgUCUCUGGc -3'
miRNA:   3'- cACCUUACC-----------ACCGCa-CCuuGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 32421 0.66 0.941891
Target:  5'- cUGGAAUauaGGggcGGCGUuaGGAuACCUCCaGGa -3'
miRNA:   3'- cACCUUA---CCa--CCGCA--CCU-UGGAGG-CC- -5'
28832 5' -55.7 NC_006146.1 + 51839 0.66 0.937233
Target:  5'- cGUGGAggGG-GGCucGGGGCCUggcccgagcCCGGg -3'
miRNA:   3'- -CACCUuaCCaCCGcaCCUUGGA---------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 151265 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 157421 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 114443 0.66 0.927219
Target:  5'- uUGGAcucuagcuuaAUGGUGGCGUGcucucuGCCaaauaCCGGg -3'
miRNA:   3'- cACCU----------UACCACCGCACcu----UGGa----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 73559 0.66 0.927219
Target:  5'- -cGGGcgGGUGGuUGUGGccgGAcgccauccucuCCUCCGGu -3'
miRNA:   3'- caCCUuaCCACC-GCACC---UU-----------GGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 113740 0.66 0.927219
Target:  5'- cUGGggUGaGgaaGGCGUGGAAgCggCGGu -3'
miRNA:   3'- cACCuuAC-Ca--CCGCACCUUgGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 142031 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145109 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148187 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 154343 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 88137 0.66 0.921862
Target:  5'- -cGGAAUGG-GGCGcaaaGGGGCUUCacgaGGu -3'
miRNA:   3'- caCCUUACCaCCGCa---CCUUGGAGg---CC- -5'
28832 5' -55.7 NC_006146.1 + 137225 0.66 0.921862
Target:  5'- -aGGAAgccgGGUGGgGgccUGGggUC-CCGGg -3'
miRNA:   3'- caCCUUa---CCACCgC---ACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 161729 0.66 0.921862
Target:  5'- uUGGGGgugGGUGGCacggugGGAGCCcgCCGu -3'
miRNA:   3'- cACCUUa--CCACCGca----CCUUGGa-GGCc -5'
28832 5' -55.7 NC_006146.1 + 64248 0.67 0.916272
Target:  5'- -gGGGcgGGaggGGCGUGGcuCgCUCCGa -3'
miRNA:   3'- caCCUuaCCa--CCGCACCuuG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 33835 0.67 0.916272
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGa -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 131542 0.67 0.910451
Target:  5'- aGUGGGAcguuUGGUGGU--GGGACg-CCGGg -3'
miRNA:   3'- -CACCUU----ACCACCGcaCCUUGgaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 44309 0.67 0.910451
Target:  5'- -cGGuAGUGGgGGC-UGGGGCCguggcagCCGGg -3'
miRNA:   3'- caCC-UUACCaCCGcACCUUGGa------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.