miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 161424 0.66 0.758752
Target:  5'- --uGCCAG-GCgggugugGCCCCGcGGGaACCCa -3'
miRNA:   3'- gagUGGUCgUGa------CGGGGCuCCC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 18009 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 27243 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 21087 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 147983 0.66 0.758752
Target:  5'- gUCGUguGCAUgGCCCuCGuGGGGCCUu -3'
miRNA:   3'- gAGUGguCGUGaCGGG-GCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 14932 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 129132 0.66 0.758752
Target:  5'- -gCGCCcgGGCGCaggGCCuCCGGcGGGaaGCCCa -3'
miRNA:   3'- gaGUGG--UCGUGa--CGG-GGCU-CCC--UGGG- -5'
28844 5' -60.9 NC_006146.1 + 128182 0.66 0.758752
Target:  5'- -aCGCCGGgagGCgGCCCaGGGGGGCgCCg -3'
miRNA:   3'- gaGUGGUCg--UGaCGGGgCUCCCUG-GG- -5'
28844 5' -60.9 NC_006146.1 + 24165 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 71343 0.66 0.758752
Target:  5'- cCUC-CUGGaccccgaucuCUGCCCCG-GGGGCUCg -3'
miRNA:   3'- -GAGuGGUCgu--------GACGGGGCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 127658 0.66 0.758752
Target:  5'- --gGCC-GCGCUGgCgCCGAGGcACCCc -3'
miRNA:   3'- gagUGGuCGUGACgG-GGCUCCcUGGG- -5'
28844 5' -60.9 NC_006146.1 + 142063 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 145141 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 148219 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 151297 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 154375 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 157453 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 127692 0.66 0.753245
Target:  5'- uCUCACCAGCAgcGCCCCauccccgccucccgcGAGGaGCUg -3'
miRNA:   3'- -GAGUGGUCGUgaCGGGG---------------CUCCcUGGg -5'
28844 5' -60.9 NC_006146.1 + 128494 0.66 0.749554
Target:  5'- uCUCGCCuucgaggacGGCGuCggggugGCCCUGGGGcGCCCc -3'
miRNA:   3'- -GAGUGG---------UCGU-Ga-----CGGGGCUCCcUGGG- -5'
28844 5' -60.9 NC_006146.1 + 52264 0.66 0.749554
Target:  5'- -gCACguGUACUggGCCCCG-GGcGCCCc -3'
miRNA:   3'- gaGUGguCGUGA--CGGGGCuCCcUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.