miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 3' -52.5 NC_006146.1 + 42689 0.66 0.987851
Target:  5'- cGCCgaaagagCGUCUGGCcc-GGCGCCGCGGc -3'
miRNA:   3'- uCGGa------GUAGGCUGuacUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 52683 0.66 0.986262
Target:  5'- cGCCUC-UCCGAgAUGGuCGCUGCc- -3'
miRNA:   3'- uCGGAGuAGGCUgUACUuGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 145486 0.66 0.986262
Target:  5'- cGUUUCAggUCCGGCGUGu---CCACGGa -3'
miRNA:   3'- uCGGAGU--AGGCUGUACuuguGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 108871 0.66 0.984517
Target:  5'- cGGCUggaAUgCGGCAgaggccGAGCGCCGCGGc -3'
miRNA:   3'- -UCGGag-UAgGCUGUa-----CUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 71535 0.66 0.984517
Target:  5'- gGGCCUCAacgCgCGGCccGGGCGCCgACGc -3'
miRNA:   3'- -UCGGAGUa--G-GCUGuaCUUGUGG-UGCu -5'
28847 3' -52.5 NC_006146.1 + 115599 0.66 0.982609
Target:  5'- aGGCUUCGcccugcacuuuuUCCGGCugcUGccCACCGCGAg -3'
miRNA:   3'- -UCGGAGU------------AGGCUGu--ACuuGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 90024 0.66 0.982609
Target:  5'- uGCCuUCAUCaacacccaGugAUG-GCACCGCGGg -3'
miRNA:   3'- uCGG-AGUAGg-------CugUACuUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 48223 0.66 0.982609
Target:  5'- gGGCCUgGcgcgCCuGgGUGAGCGCCGCGc -3'
miRNA:   3'- -UCGGAgUa---GGcUgUACUUGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 82336 0.66 0.98053
Target:  5'- cAGCUccaUAUCCGGguuacgGAGCACCACGGa -3'
miRNA:   3'- -UCGGa--GUAGGCUgua---CUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 117947 0.67 0.97827
Target:  5'- cGGCCUUcUCCGGCGaguccacGAuccuCGCCAUGAa -3'
miRNA:   3'- -UCGGAGuAGGCUGUa------CUu---GUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 68766 0.67 0.975822
Target:  5'- aAGCUUCAggcggugcgcUCUGuCAUcugGAACACCAUGAu -3'
miRNA:   3'- -UCGGAGU----------AGGCuGUA---CUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 57906 0.67 0.974259
Target:  5'- cGCCUUGUCCagGACAUGcagagggcgcuggccGGCGCCGCc- -3'
miRNA:   3'- uCGGAGUAGG--CUGUAC---------------UUGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 60073 0.67 0.973178
Target:  5'- cGCCUCGUCC--CGUGGA-GCUACGGg -3'
miRNA:   3'- uCGGAGUAGGcuGUACUUgUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 52469 0.67 0.973178
Target:  5'- gGGCCUCAUCaacacgguccUGAgCGUGAagcuGCGCCAUGc -3'
miRNA:   3'- -UCGGAGUAG----------GCU-GUACU----UGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 114386 0.67 0.973178
Target:  5'- aGGaCCUCcUCCGcgauggGCGUGGgcaGCACCAUGGg -3'
miRNA:   3'- -UC-GGAGuAGGC------UGUACU---UGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 124179 0.67 0.973178
Target:  5'- uGGCCUCcgCCcGCcucgGAGCcGCCGCGGc -3'
miRNA:   3'- -UCGGAGuaGGcUGua--CUUG-UGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 101035 0.67 0.970331
Target:  5'- uGGCCUCgGUCCuGCAUGccuGCGCCuGCGu -3'
miRNA:   3'- -UCGGAG-UAGGcUGUACu--UGUGG-UGCu -5'
28847 3' -52.5 NC_006146.1 + 91016 0.67 0.970331
Target:  5'- cGCUUUAga-GGCAUGcuCACCACGAc -3'
miRNA:   3'- uCGGAGUaggCUGUACuuGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 121113 0.67 0.967589
Target:  5'- cGGaCCUCAacaUCCGGCAcgcgagcaucgagcgGGACuACCGCGAg -3'
miRNA:   3'- -UC-GGAGU---AGGCUGUa--------------CUUG-UGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 160713 0.67 0.967274
Target:  5'- cGUCUCGUCCuGgGUGAACACaGCGu -3'
miRNA:   3'- uCGGAGUAGGcUgUACUUGUGgUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.