miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 124676 0.65 0.841707
Target:  5'- cCUCCCUCCGGCuucauuuUCCUCCaggaaGCC-UGGg -3'
miRNA:   3'- -GAGGGGGGUCG-------AGGAGGaa---UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 138723 0.65 0.841707
Target:  5'- cCUCCCCCCc-CUaccccccCCUCCUUACgGUu- -3'
miRNA:   3'- -GAGGGGGGucGA-------GGAGGAAUGgCAcu -5'
28852 5' -58.8 NC_006146.1 + 132987 0.66 0.834515
Target:  5'- gUCCCUgcuuagCAGCUCCcCCagcGCCGUGAa -3'
miRNA:   3'- gAGGGGg-----GUCGAGGaGGaa-UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 53995 0.66 0.834515
Target:  5'- -aUCCCCCGGCUuucCCUCaggGCCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA---GGAGgaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 85909 0.66 0.834515
Target:  5'- cCUCUcgcgauggaCCCCAGCUugCCUCCUgaagaUGUGAa -3'
miRNA:   3'- -GAGG---------GGGGUCGA--GGAGGAaug--GCACU- -5'
28852 5' -58.8 NC_006146.1 + 19966 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 102283 0.66 0.826357
Target:  5'- uCUCCCCgCCAGC-CCUCCcuuCCu--- -3'
miRNA:   3'- -GAGGGG-GGUCGaGGAGGaauGGcacu -5'
28852 5' -58.8 NC_006146.1 + 13811 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 16889 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 23044 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 26122 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 29200 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 67771 0.66 0.826357
Target:  5'- -cUCCCCCAGCUCggCCagggaCGUGAc -3'
miRNA:   3'- gaGGGGGGUCGAGgaGGaaug-GCACU- -5'
28852 5' -58.8 NC_006146.1 + 115319 0.66 0.818032
Target:  5'- -gCCCCUCGGCggCCUCCUgGuuGUa- -3'
miRNA:   3'- gaGGGGGGUCGa-GGAGGAaUggCAcu -5'
28852 5' -58.8 NC_006146.1 + 144756 0.66 0.800907
Target:  5'- -gCCCCCguGCUCUUUCcgACCGg-- -3'
miRNA:   3'- gaGGGGGguCGAGGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 40955 0.66 0.800907
Target:  5'- -cCCaCCCCAGgUCCgugCCguagaccGCCGUGGu -3'
miRNA:   3'- gaGG-GGGGUCgAGGa--GGaa-----UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 113883 0.66 0.800907
Target:  5'- aCUCCaCCgCCAcCUCCUCCUcgGCCaUGGc -3'
miRNA:   3'- -GAGG-GG-GGUcGAGGAGGAa-UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 4223 0.67 0.795654
Target:  5'- uCUCCCCCCugccaggccacaccGCUCCcCCUUcCCGg-- -3'
miRNA:   3'- -GAGGGGGGu-------------CGAGGaGGAAuGGCacu -5'
28852 5' -58.8 NC_006146.1 + 32798 0.67 0.783203
Target:  5'- aUCCCCgCAGCaCCUCCUUgGCUGc-- -3'
miRNA:   3'- gAGGGGgGUCGaGGAGGAA-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 111481 0.67 0.783203
Target:  5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3'
miRNA:   3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.